Pairwise Alignments

Query, 334 a.a., Holliday junction branch migration DNA helicase RuvB from Vibrio cholerae E7946 ATCC 55056

Subject, 441 a.a., DNA-dependent ATPase required for recombination from Pseudomonas putida KT2440

 Score = 61.2 bits (147), Expect = 5e-14
 Identities = 72/306 (23%), Positives = 120/306 (39%), Gaps = 72/306 (23%)

Query: 25  IRPKKLADYQGQDHVRDQMEIFIQAAQMRQEALDHLLIFGPPGLGKTTLANIVANEMGVN 84
           +RP  L +Y GQ+H+  + +   +A  + Q AL  ++ +GPPG+GKTTLA ++A     +
Sbjct: 17  LRPSSLDEYVGQEHLLARGKPLREA--LEQGALHSMIFWGPPGVGKTTLARLLAQFCDAH 74

Query: 85  IRTTSGPV-----LEKAGDLAALLT-NLEENDVLFIDEIHRLSPMVEEVLYPAMEDYQLD 138
             T S  +     + +A ++A           +LF+DE+HR +   ++   P +ED  L 
Sbjct: 75  FETVSAVLAGVKEIRQAVEVAKQQAGQYGRRTILFVDEVHRFNKSQQDAFLPYVEDGTL- 133

Query: 139 IMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQRLEYYKVADLQHIVQRS 198
                                IGATT   S                     +L + +   
Sbjct: 134 -------------------LFIGATTENPSF--------------------ELNNALLSR 154

Query: 199 AQCLGLSMDSEGALEVARRARGTPRIANRLLRRVRDYAEVKGDGHICAQTADRALNMLDV 258
           A+   L    E AL          ++ NR L       E +G G    +  D A  ML  
Sbjct: 155 ARVYVLKSLDEAALR---------KLVNRAL------TEERGLGKRNLRVGDDAFKMLMA 199

Query: 259 DHQGFDYMDRKLLLAIMEKFS-----GGPVGIDNLAAAIGEEKDTIEDVLEPFLIQQGYL 313
              G    D + +L  +E  S     G  + ++ L + +G+ +   +   E F  Q   L
Sbjct: 200 AADG----DGRRMLNFLENASDLAEDGSEIDVEMLQSLLGDSRRRFDKGGEAFYDQISAL 255

Query: 314 QRTPRG 319
            ++ RG
Sbjct: 256 HKSVRG 261