Pairwise Alignments

Query, 334 a.a., Holliday junction branch migration DNA helicase RuvB from Vibrio cholerae E7946 ATCC 55056

Subject, 447 a.a., replication-associated recombination protein RarA from Escherichia coli ECRC62

 Score = 64.7 bits (156), Expect = 4e-15
 Identities = 64/251 (25%), Positives = 106/251 (42%), Gaps = 39/251 (15%)

Query: 8   IAPISNHFKDE--EVIDRAIRPKKLADYQGQDHVRDQMEIFIQAAQMRQEALDHLLIFGP 65
           ++ +S  F D   + +   +RP+ LA Y GQ H+    +   +A +     L  ++++GP
Sbjct: 1   VSNLSLDFSDNTFQPLAARMRPENLAQYIGQQHLLAAGKPLPRAIEAGH--LHSMILWGP 58

Query: 66  PGLGKTTLANIVANEMGVNIR----TTSG-PVLEKAGDLAALLTNLEENDVLFIDEIHRL 120
           PG GKTTLA ++A     ++      TSG   + +A + A    N     +LF+DE+HR 
Sbjct: 59  PGTGKTTLAEVIARYANADVERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRF 118

Query: 121 SPMVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGS--LTSPLRDRFG 178
           +   ++   P +ED  +                    T IGATT   S  L S L  R  
Sbjct: 119 NKSQQDAFLPHIEDGTI--------------------TFIGATTENPSFELNSALLSR-A 157

Query: 179 IVQRLEYYKVADLQHIVQRSAQ-------CLGLSMDSEGALEVARRARGTPRIANRLLRR 231
            V  L+     D++ ++ ++ +          + +  E    +A    G  R A   L  
Sbjct: 158 RVYLLKSLGTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNTLEM 217

Query: 232 VRDYAEVKGDG 242
           + D AEV   G
Sbjct: 218 MADMAEVNDSG 228