Pairwise Alignments

Query, 541 a.a., cytochrome d terminal oxidase subunit 1 from Vibrio cholerae E7946 ATCC 55056

Subject, 472 a.a., Cytochrome bd-II ubiquinol oxidase subunit 1 from Xanthobacter sp. DMC5

 Score =  197 bits (502), Expect = 6e-55
 Identities = 104/307 (33%), Positives = 169/307 (55%), Gaps = 2/307 (0%)

Query: 15  IDVVDLSRLQFALTAMYHFLFVPLTLGMAFLLAIMESLYVMTDKQIYKDMTKFWGKLFGI 74
           +D + LSRLQFA T  +H L+  LT+G A+ + ++  L+  T K +Y+D+ +FW +LF +
Sbjct: 1   MDALALSRLQFAFTVGFHILWPTLTIGTAWFVTLLSFLWWRTGKTVYRDLMRFWMRLFAL 60

Query: 75  NFALGVATGLTMEFQFGTNWSYYSHYVGDIFGAPLAIEALVAFFLESTFVGLFFFGWDRL 134
            F +GV +G+ + ++ GTNW+ +S  V ++ G  LA E + AFFLE+ F+G+  FG  R+
Sbjct: 61  VFGMGVVSGIVLSYEIGTNWAGFSRSVANVLGPLLAYETMTAFFLEAGFIGIMLFGEARV 120

Query: 135 SKRQHLVVTWLVALGSNFSALWILVANGWMQNPVGSEFNFETMRMEMVSFADVVLNPVAQ 194
           SK  H     +VA G+  S  WI+ +N WMQ P G+  +   +   +V +  V+      
Sbjct: 121 SKATHFFACLMVAGGALISTTWIIASNSWMQTPAGAVADASGI-YHVVDWWQVIFTASFP 179

Query: 195 VKFVHTVAAGYTTGAMFILGISAYYLLKGRDVAFARRSFAIAASFGMASVLSVIVLGDES 254
            +  H V A + T A  I G+SA+++ +G+ V  +R +F++A    +      I +GD  
Sbjct: 180 YRLAHMVCASFLTCAFVIAGVSAFHMWRGQHVTASRTAFSMALWLALVLAPLQIFIGDLH 239

Query: 255 GYELGEVQRVKLAAIESEWHTEPAPAAFTLFGIPNQEEMRTDYAIKIPFALGIIATRSLD 314
           G      Q  KLAA+E  W T   P A T+   P+    +  YA++IP    +  T S +
Sbjct: 240 GRNTLVHQPTKLAAMEGLWDTTRGP-AMTVIAWPDMAAQKNLYAVEIPHLASLYLTHSWN 298

Query: 315 EQVVGLR 321
            +V GL+
Sbjct: 299 GEVEGLK 305



 Score = 81.3 bits (199), Expect = 8e-20
 Identities = 41/136 (30%), Positives = 70/136 (51%)

Query: 383 EQIQAAADDSIPTVWPLFWSFRIMVACGFIMLVVFGAAFIQTCRQKIEQKKWVLKAALFS 442
           E ++A      P V  +F++FRIM   G ++L       +   R ++   +W    A+ +
Sbjct: 302 EGLKAVPPADQPNVPIVFFAFRIMAGIGMVLLATAVTGLVLRLRGRLYNARWFQYLAMAT 361

Query: 443 IPLPWIAVETGWFVAEYGRQPWAVGEILPVNVAASALSAGEIITSMLAILALYTIFLIAE 502
            PL  +AV  GW V E GRQPW +  +L    A + ++AG + TS++   A+Y + L+A 
Sbjct: 362 TPLGLVAVLAGWTVTEAGRQPWIIYSVLRTADAVAPVTAGAVTTSLIIFFAVYNLLLLAF 421

Query: 503 VYLMVKFTRKGPSSLK 518
           ++   +   KGP+  K
Sbjct: 422 LWFAGRVAFKGPTDTK 437