Pairwise Alignments

Query, 541 a.a., cytochrome d terminal oxidase subunit 1 from Vibrio cholerae E7946 ATCC 55056

Subject, 479 a.a., cytochrome D ubiquinol oxidase subunit I from Pseudomonas simiae WCS417

 Score =  240 bits (612), Expect = 1e-67
 Identities = 149/505 (29%), Positives = 235/505 (46%), Gaps = 72/505 (14%)

Query: 15  IDVVDLSRLQFALTAMYHFLFVPLTLGMAFLLAIMESLYVMTDKQIYKDMTKFWGKLFGI 74
           ++ +DL+R+QFA T  +H LF  +T+G+A  LA++E L++ T    Y+D+  FW K+F +
Sbjct: 4   LEALDLARIQFAFTISFHILFPAITIGLASYLAVLEGLWLKTHNDTYRDLYHFWSKIFAV 63

Query: 75  NFALGVATGLTMEFQFGTNWSYYSHYVGDIFGAPLAIEALVAFFLESTFVGLFFFGWDRL 134
           NF +GV +GL M +QFGTNWS +S + G + G  L  E L AFFLE+ F+G+  FGW+++
Sbjct: 64  NFGMGVVSGLVMAYQFGTNWSRFSDFAGAVTGPLLTYEVLTAFFLEAGFLGVMLFGWNKV 123

Query: 135 SKRQHLVVTWLVALGSNFSALWILVANGWMQNPVGSEFNFETMRMEMVSFADVVLNPVAQ 194
            +  H   T +VA+G+  S  WIL +N WMQ P G  F     R+    +  VV NP   
Sbjct: 124 GRNLHFFSTVMVAVGTLISTFWILSSNSWMQTPQG--FEIIDGRVIPTDWFAVVFNPSFP 181

Query: 195 VKFVHTVAAGYTTGAMFILGISAYYLLKGRDVAFARRSFAIAASFGMASVLSVIVLGDES 254
            +  H   A +   A F+   +A++LL+G+D    R+  ++A    +       V+GD  
Sbjct: 182 YRLAHMATAAFVATAFFVGSSAAWHLLRGKDNPAIRKMLSMAMWMALIVAPIQAVIGDFH 241

Query: 255 GYELGEVQRVKLAAIESEWH---TEPAPAAFTLFGIPNQEEMRTDYAIKIPFALGIIATR 311
           G    + Q  K+AAIE  W     EP P    LFG P+ +  +T YA++IP+   +I T 
Sbjct: 242 GLNTLKHQPAKIAAIEGHWENIGNEPTP--LILFGWPDMKAEKTKYAVEIPYLGSLILTH 299

Query: 312 SLDEQVVGLRDLRDEHVERIRTGIYAYDLLERLRAGEKTPENMAAFDEVKHDLGYGLLLK 371
           SLD+QV  L++                         E  P +   F   +  +G G L  
Sbjct: 300 SLDKQVPALKEF----------------------PPEDRPNSTIVFWSFRVMVGLGFL-- 335

Query: 372 RYTDKVTDATEEQIQAAADDSIPTVWPLFWSFRIMVACGFIMLVVFGAAFIQTCRQKIEQ 431
                                             M+  G   L +     + T +  +  
Sbjct: 336 ----------------------------------MIFTGLFSLWLRRGDKMYTSKPFLYL 361

Query: 432 KKWVLKAALFSIPLPWIAVETGWFVAEYGRQPWAVGEILPVNVAASALSAGEIITSMLAI 491
             W+  + L +I   W       F  E GRQPW V  ++    A+S  S  ++  +++  
Sbjct: 362 ALWMGPSGLIAILAGW-------FTTEIGRQPWVVYGLMRTADASSGHSLAQMTITLVLF 414

Query: 492 LALYTIFLIAEVYLMVKFTRKGPSS 516
           + +Y     A +  M++  RKGP +
Sbjct: 415 VVVYFALFGAGLGYMMRLVRKGPQT 439