Pairwise Alignments

Query, 541 a.a., cytochrome d terminal oxidase subunit 1 from Vibrio cholerae E7946 ATCC 55056

Subject, 454 a.a., Cytochrome d ubiquinol oxidase subunit I (EC 1.10.3.-) from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  214 bits (546), Expect = 4e-60
 Identities = 116/313 (37%), Positives = 167/313 (53%), Gaps = 3/313 (0%)

Query: 15  IDVVDLSRLQFALTAMYHFLFVPLTLGMAFLLAIMESLYVMTDKQIYKDMTKFWGKLFGI 74
           +D + LSR+QFA    +H LF  +T+ M + L      Y+ T    +++   FW K+F +
Sbjct: 1   MDALILSRIQFAANISFHILFPTITIAMGWFLLFFRIRYLKTRDPAWEEAYYFWTKVFAL 60

Query: 75  NFALGVATGLTMEFQFGTNWSYYSHYVGDIFGAPLAIEALVAFFLESTFVGLFFFGWDRL 134
           +FALGV +G+ M FQFGTNW  +    G+I G  L  E L AFFLE++F+G+  FG  R+
Sbjct: 61  SFALGVVSGIVMSFQFGTNWPGFMERAGNIAGPLLGYEVLTAFFLEASFLGIMLFGRGRV 120

Query: 135 SKRQHLVVTWLVALGSNFSALWILVANGWMQNPVGSEFNFETMRMEMVSFADVVLNPVAQ 194
           S+R HL  T+LVA G+  SA WIL  N WMQ P G  F     +   V +  VV NP   
Sbjct: 121 SERVHLAATFLVAFGTTMSAFWILSLNSWMQTPAG--FEIVDGKFIPVDWFAVVFNPSFP 178

Query: 195 VKFVHTVAAGYTTGAMFILGISAYYLLKGRDVAFARRSFAIAASFGMASVLSVIVLGDES 254
            +  H + A   T +  I G+ A+ L+KG       ++   A      ++    + GD  
Sbjct: 179 YRLAHKLLASALTASFLIAGLCAWQLIKGSATGGTHKALRTAIIAASVAMPLQFLAGDMH 238

Query: 255 GYELGEVQRVKLAAIESEWHTEPAPAAFTLFGIPNQEEMRTDYAIKIPFALGIIATRSLD 314
           G    E Q  K+AA+E  WHTE + A  TLFGIP++    T YA+KIP    +I    +D
Sbjct: 239 GLNTLEHQPAKIAALEGIWHTEKS-APLTLFGIPDEAAGTTHYAVKIPKMASLILAHDMD 297

Query: 315 EQVVGLRDLRDEH 327
            ++ GL +  + H
Sbjct: 298 AELKGLNEFPNAH 310



 Score = 62.4 bits (150), Expect = 4e-14
 Identities = 41/119 (34%), Positives = 61/119 (51%), Gaps = 12/119 (10%)

Query: 394 PTVWPLFWSFRIMVACGFIMLVVFGAAFIQTCRQKIEQKK---------WVLKAALFSIP 444
           P V P+FW+FR+MV  G +MLVV   +     R++ + +          +VL    FS  
Sbjct: 311 PPVAPIFWAFRVMVGVGSLMLVVAWVSAWLLWRRRRQPRGSMDLPKPALYVLAGMTFS-- 368

Query: 445 LPWIAVETGWFVAEYGRQPWAVGEILPVNVAASALSAGEIITSMLAILALYTIFLIAEV 503
             W+A  +GW+V E GRQP+ V   L     A+ L +  I T++ A L +Y + LI  V
Sbjct: 369 -GWLATLSGWYVTEIGRQPFLVYGHLRTAEVATNLPSPMIATTLAAYLIVYGLLLITYV 426