Pairwise Alignments

Query, 541 a.a., cytochrome d terminal oxidase subunit 1 from Vibrio cholerae E7946 ATCC 55056

Subject, 467 a.a., putative Cytochrome bd2, subunit I from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  235 bits (599), Expect = 3e-66
 Identities = 121/312 (38%), Positives = 178/312 (57%), Gaps = 3/312 (0%)

Query: 16  DVVDLSRLQFALTAMYHFLFVPLTLGMAFLLAIMESLYVMTDKQIYKDMTKFWGKLFGIN 75
           D   L+RLQFA T  +H +F  +T+G+A  L ++E L++ T   +++ + +FW K+F +N
Sbjct: 4   DAFFLARLQFAFTVSFHIIFPAITIGLASYLVVLEGLWLKTRNPVWRSLYQFWLKIFAVN 63

Query: 76  FALGVATGLTMEFQFGTNWSYYSHYVGDIFGAPLAIEALVAFFLESTFVGLFFFGWDRLS 135
           F +GV +GL M +QFGTNWS +S + G I G  L  E L AFFLE+ F+G+  FGW+++ 
Sbjct: 64  FGMGVVSGLVMAYQFGTNWSGFSQFAGSITGPLLTYEVLTAFFLEAGFLGVMLFGWNKVG 123

Query: 136 KRQHLVVTWLVALGSNFSALWILVANGWMQNPVGSEFNFETMRMEMVSFADVVLNPVAQV 195
              H + T +VALG+  S  WIL +N WM  P G  F     ++  V +  V+ NP    
Sbjct: 124 PGLHFLSTCMVALGTLMSTFWILASNSWMHTPQG--FEIHNGQVVPVDWFAVIFNPSFPY 181

Query: 196 KFVHTVAAGYTTGAMFILGISAYYLLKGRDVAFARRSFAIAASFGMASVLSVIVLGDESG 255
           + +H   A + + AMF+   +A++LLKG D    RR F++A    +       ++GD  G
Sbjct: 182 RLLHMSVAAFLSSAMFVGASAAWHLLKGNDTPAIRRMFSMALWMAVVVAPVQALIGDMHG 241

Query: 256 YELGEVQRVKLAAIESEWHTEPA-PAAFTLFGIPNQEEMRTDYAIKIPFALGIIATRSLD 314
               + Q VK+AAIE  W   P  P   TL G P+ E  RT YA++IP    +I T SLD
Sbjct: 242 LNTLKHQPVKIAAIEGHWENTPGEPTPLTLVGWPDMEAERTRYALEIPALGSLILTHSLD 301

Query: 315 EQVVGLRDLRDE 326
           +QV  L+D   E
Sbjct: 302 KQVPALKDYPKE 313



 Score = 78.2 bits (191), Expect = 6e-19
 Identities = 63/247 (25%), Positives = 116/247 (46%), Gaps = 10/247 (4%)

Query: 278 APAAFTLFGIPNQEEMRTDYAIKIPFALGIIATRSLDEQVVGLRDLRDEHVERIRTGIYA 337
           A AA+ L    +   +R  +++ +  A+ +   ++L   + GL  L+ + V+     I A
Sbjct: 200 ASAAWHLLKGNDTPAIRRMFSMALWMAVVVAPVQALIGDMHGLNTLKHQPVK-----IAA 254

Query: 338 YDLLERLRAGEKTPENMAAFDEVKHD-LGYGLLLKRYTDKV-TDATEEQIQAAAD---DS 392
            +       GE TP  +  + +++ +   Y L +      + T + ++Q+ A  D   + 
Sbjct: 255 IEGHWENTPGEPTPLTLVGWPDMEAERTRYALEIPALGSLILTHSLDKQVPALKDYPKED 314

Query: 393 IPTVWPLFWSFRIMVACGFIMLVVFGAAFIQTCRQKIEQKKWVLKAALFSIPLPWIAVET 452
            P    +FWSFR+MV  G +M+ +  A+     R+++   +  +  AL+  P   IA+  
Sbjct: 315 RPNSTVVFWSFRLMVGMGVLMIFLGLASLWLRYRRRLYHSRPFMHFALWMGPSGLIAILA 374

Query: 453 GWFVAEYGRQPWAVGEILPVNVAASALSAGEIITSMLAILALYTIFLIAEVYLMVKFTRK 512
           GW   E GRQPW V  +L    A SA S  ++  S+LA   +Y++        M++  +K
Sbjct: 375 GWVTTEVGRQPWVVYGLLRTRDAVSAHSTLQMSISLLAFFVVYSLVFGVGYIYMIRLIQK 434

Query: 513 GPSSLKT 519
           GP   +T
Sbjct: 435 GPQPAET 441