Pairwise Alignments

Query, 378 a.a., cytochrome d ubiquinol oxidase subunit II from Vibrio cholerae E7946 ATCC 55056

Subject, 335 a.a., cytochrome d ubiquinol oxidase subunit II from Variovorax sp. OAS795

 Score =  161 bits (407), Expect = 3e-44
 Identities = 115/365 (31%), Positives = 171/365 (46%), Gaps = 47/365 (12%)

Query: 7   LRLIWWVLIGVLLVGFAITDGFDMGVGALVPIIGKNDNERRVMINSIAPHWDGNQVWLIT 66
           L LIW V+I   ++ + + DGFD+G+G L P +   + +R VM+N++AP WDGN+ WL+ 
Sbjct: 5   LPLIWAVIILFGIMMYVVMDGFDLGIGILFPFLPAKE-DRDVMMNTVAPVWDGNETWLVL 63

Query: 67  AGGALFAAWPLVYATSFSGFYLAMIVTLAALWLRPVGLDYRSKIESTKWRNNWDLAISAS 126
            G  L AA+PL YA   S FYL +I+ L  L  R V  ++R K    K R  WD A    
Sbjct: 64  GGAGLLAAFPLAYAVILSAFYLPLILMLVGLVFRGVAFEFRFKARPGK-RRWWDAAFIGG 122

Query: 127 GFIPPVIFGVAFGNLLQGVPFQLSDFLMPTYHGSFFGLLNPFALLCGLVSLFMTLLQGSA 186
            F      GV  G  L G+     +F      G  F  ++PF+L  G+  +    L G+ 
Sbjct: 123 SFTATFFQGVTLGAFLNGLKVVDGNFA-----GGSFDWVSPFSLFTGIALVAAYALLGAT 177

Query: 187 WLQMKTTSHVHQRARNVAQLTGLLTAVCFVAAGFWVQHIDGYMIVGAIDGNAASNPLNKE 246
           WL MKT   + +R R++A+    L     VA   W                    PL  E
Sbjct: 178 WLVMKTEGRLQERMRSLARPLAWLMLAVIVAISIW-------------------TPLAHE 218

Query: 247 VIREAGAWLHNFEQVPVLWLAPA--LGVLMPLLSVLASRLDKGGLAFLTS----SLGNAG 300
            I  A  W   F    +L+ AP   L  L+    +LA R D     F+ +     LG  G
Sbjct: 219 AI--ATRW---FSLPNLLYFAPVPLLVALVVYRLLLALRGDGHASPFVLTLALLFLGYTG 273

Query: 301 VIFTAGFAMFPFVMPSSLNPAHSLTMWDATSSKLTLELMTVVAVVMVPIILGYTIWSYYK 360
           +    G +++P V+P        +++W A     +L    V A++++P+IL YT WSY+ 
Sbjct: 274 L----GISLWPHVIPP------DISIWQAAGPAQSLGFALVGALLIIPVILMYTAWSYWV 323

Query: 361 MFGRL 365
             G++
Sbjct: 324 FRGKV 328