Pairwise Alignments

Query, 378 a.a., cytochrome d ubiquinol oxidase subunit II from Vibrio cholerae E7946 ATCC 55056

Subject, 381 a.a., Cytochrome d ubiquinol oxidase subunit II (EC 1.10.3.-) from Sphingobium sp. HT1-2

 Score =  376 bits (966), Expect = e-109
 Identities = 186/372 (50%), Positives = 241/372 (64%), Gaps = 1/372 (0%)

Query: 3   DYEILRLIWWVLIGVLLVGFAITDGFDMGVGALVPIIGKNDNERRVMINSIAPHWDGNQV 62
           DYE LR+IWW+L+GVLL+GFA+TDGFD+G  AL+P  G+ D ERR++INS+   W+GNQV
Sbjct: 6   DYETLRVIWWLLLGVLLIGFALTDGFDLGSAALLPFAGRTDEERRMIINSVGATWEGNQV 65

Query: 63  WLITAGGALFAAWPLVYATSFSGFYLAMIVTLAALWLRPVGLDYRSKIESTKWRNNWDLA 122
           W I  GGA+FAAWP VYA SFSGFYLAM + L+AL LRPVG  YRSK    +WR  WD A
Sbjct: 66  WFILGGGAIFAAWPFVYAVSFSGFYLAMFLVLSALILRPVGFKYRSKKPDARWRAGWDWA 125

Query: 123 ISASGFIPPVIFGVAFGNLLQGVPFQLSDFLMPTYHGSFFGLLNPFALLCGLVSLFMTLL 182
           +   G +P ++FGVA GN+L G PF+L   L   Y GS  GL  PF LL GL+S+ M +L
Sbjct: 126 LFVGGLVPALVFGVAVGNVLVGAPFRLDGDLRMFYEGSLLGLFTPFTLLTGLLSVAMLVL 185

Query: 183 QGSAWLQMKTTSHVHQRARNVAQLTGLLTAVCFVAAGFWVQHID-GYMIVGAIDGNAASN 241
            G+ WL +KT   V QR R   Q   +L+ + F   G +V     GY + G ID N  SN
Sbjct: 186 HGAGWLSLKTEGPVLQRVRLYGQGAAILSILLFAIGGLFVAWSGMGYRVDGVIDPNGPSN 245

Query: 242 PLNKEVIREAGAWLHNFEQVPVLWLAPALGVLMPLLSVLASRLDKGGLAFLTSSLGNAGV 301
           P     +  AGAWL N+   P + LAP LG   P+L++L  R  +  L F  SS+ N G+
Sbjct: 246 PHLGGAVAAAGAWLDNYAAHPWMLLAPILGFAGPVLALLGIRGRRDTLVFAGSSIANVGI 305

Query: 302 IFTAGFAMFPFVMPSSLNPAHSLTMWDATSSKLTLELMTVVAVVMVPIILGYTIWSYYKM 361
           I T G +MFPF++PSS++P  SLT W+A+SS  TL  M +  V+ +PI+L YT W+Y  M
Sbjct: 306 ISTVGLSMFPFILPSSIDPGSSLTAWNASSSHGTLFTMLICTVIFLPIVLAYTAWAYKVM 365

Query: 362 FGRLDDKFIEDN 373
           FGR+ D+ I  N
Sbjct: 366 FGRVTDREIRLN 377