Pairwise Alignments

Query, 378 a.a., cytochrome d ubiquinol oxidase subunit II from Vibrio cholerae E7946 ATCC 55056

Subject, 336 a.a., putative Cytochrome bd2, subunit II from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  145 bits (367), Expect = 1e-39
 Identities = 111/366 (30%), Positives = 169/366 (46%), Gaps = 48/366 (13%)

Query: 7   LRLIWWVLIGVLLVGFAITDGFDMGVGALVPIIGKNDNERRVMINSIAPHWDGNQVWLIT 66
           L +IW+ +I    + + + DGFD+GVG L P I ++ ++R VM+NS+AP WDGN+ WL+ 
Sbjct: 5   LPVIWFAIIVFATLMYIVMDGFDLGVGILFPFI-RDKHDRDVMVNSVAPVWDGNETWLVL 63

Query: 67  AGGALFAAWPLVYATSFSGFYLAMIVTLAALWLRPVGLDYRSKIESTKWRNNWDLAISAS 126
            G  LF A+PL YA       + ++V L  L  R V  ++R K   +  R  WD +    
Sbjct: 64  GGAGLFGAFPLAYAVITDALTIPLVVMLLGLIFRGVAFEFRFKATESH-RAFWDKSFIVG 122

Query: 127 GFIPPVIFGVAFGNLLQGVPFQLSDFLMPTYHGSFFGLLNPFALLCGLVSLFMTLLQGSA 186
             +     GV  G ++ G  FQ+      T+ GS    L PF L CG+  +    L G+ 
Sbjct: 123 SILATFAQGVVVGAVVSG--FQVEG---RTFSGSQLDWLTPFNLFCGVGLVVTYALLGAT 177

Query: 187 WLQMKTTSHVHQRARNVAQLTGLLTAVCFVAAGFWVQHIDGYMIVGAIDGNAASNPLNKE 246
           WL MK+   +H R   +  L+  L  V  +  G                G +   PL  +
Sbjct: 178 WLIMKSEDPLHSR---MCALSRPLLIVLLLVMG----------------GVSVWTPLTHD 218

Query: 247 VIREAGAWLHN---FEQVPVLWLAPALGVLMPLLSVLASRLDKGGLAFLTSSLGNAGVIF 303
            I E    L N   F  VPVL LA          SV   R  K   +     +   G+IF
Sbjct: 219 DIAERWFTLPNLYYFLPVPVLVLA---------FSVWLWRSVKKPESHARPFILTLGLIF 269

Query: 304 TA----GFAMFPFVMPSSLNPAHSLTMWDATSSKLTLELMTVVAVVMVPIILGYTIWSYY 359
                 G +++P ++P        ++++ A +   +   M V A++++PIIL YT WSYY
Sbjct: 270 LGFSGLGISIWPNIIPP------DISLYAAAAPPQSQSFMLVGALIIIPIILAYTFWSYY 323

Query: 360 KMFGRL 365
              G++
Sbjct: 324 VFRGKV 329