Pairwise Alignments

Query, 378 a.a., cytochrome d ubiquinol oxidase subunit II from Vibrio cholerae E7946 ATCC 55056

Subject, 378 a.a., cytochrome bd-II oxidase, subunit II from Escherichia coli BL21

 Score =  441 bits (1134), Expect = e-128
 Identities = 207/379 (54%), Positives = 274/379 (72%), Gaps = 2/379 (0%)

Query: 1   MFDYEILRLIWWVLIGVLLVGFAITDGFDMGVGALVPIIGKNDNERRVMINSIAPHWDGN 60
           MFDYE LR IWW+LIGV+LV F I+DGFDMG+G L+P++ +ND+ERR++INS+  HW+GN
Sbjct: 1   MFDYETLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGN 60

Query: 61  QVWLITAGGALFAAWPLVYATSFSGFYLAMIVTLAALWLRPVGLDYRSKIESTKWRNNWD 120
           QVWLI AGGALFAAWP VYA +FSGFY+AMI+ L +L+ RP+  DYR KI   +WR  WD
Sbjct: 61  QVWLILAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWD 120

Query: 121 LAISASGFIPPVIFGVAFGNLLQGVPFQLSDFLMPTYHGSFFGLLNPFALLCGLVSLFMT 180
             +     +PPV+FG+AFGNLL GVPF  +  L   Y GSF+ LL PF LLCGL+SL M 
Sbjct: 121 AGLVIGSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMV 180

Query: 181 LLQGSAWLQMKTTSHVHQRARNVAQLTGLLTAVCFVAAGFWV-QHIDGYMIVGAIDGNAA 239
           +LQG  WLQ+KT   +H R++   +   LL  +CF+ AG+W+   IDG++++ A D N  
Sbjct: 181 ILQGGVWLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLL-AQDANGP 239

Query: 240 SNPLNKEVIREAGAWLHNFEQVPVLWLAPALGVLMPLLSVLASRLDKGGLAFLTSSLGNA 299
           SNPL K V    GAW++NF + PVLW+ P LG   PLL+V+A    + G  FL +SL   
Sbjct: 240 SNPLMKLVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQF 299

Query: 300 GVIFTAGFAMFPFVMPSSLNPAHSLTMWDATSSKLTLELMTVVAVVMVPIILGYTIWSYY 359
           GVIFTAG  +FPFVMPSS++P  SLT+WD+TSS+LTL +M V+ ++ +PI+L YT+WSYY
Sbjct: 300 GVIFTAGITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYY 359

Query: 360 KMFGRLDDKFIEDNKNSLY 378
           KM+GR+  + +  N+N LY
Sbjct: 360 KMWGRMTTETLRRNENELY 378