Pairwise Alignments

Query, 378 a.a., cytochrome d ubiquinol oxidase subunit II from Vibrio cholerae E7946 ATCC 55056

Subject, 379 a.a., cytochrome d terminal oxidase, subunit II from Escherichia coli BL21

 Score =  508 bits (1307), Expect = e-148
 Identities = 243/379 (64%), Positives = 295/379 (77%), Gaps = 1/379 (0%)

Query: 1   MFDYEILRLIWWVLIGVLLVGFAITDGFDMGVGALVPIIGKNDNERRVMINSIAPHWDGN 60
           M DYE+LR IWW+L+GVLL+GFA+TDGFDMGVG L   +G+ND ERR+MINSIAPHWDGN
Sbjct: 1   MIDYEVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGN 60

Query: 61  QVWLITAGGALFAAWPLVYATSFSGFYLAMIVTLAALWLRPVGLDYRSKIESTKWRNNWD 120
           QVWLITAGGALFAAWP+VYA +FSGFY+AMI+ LA+L+ RPVG DYRSKIE T+WRN WD
Sbjct: 61  QVWLITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWD 120

Query: 121 LAISASGFIPPVIFGVAFGNLLQGVPFQLSDFLMPTYHGSFFGLLNPFALLCGLVSLFMT 180
             I    F+PP++ GVAFGNLLQGVPF + ++L   Y G+FF LLNPF LL G+VS+ M 
Sbjct: 121 WGIFIGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMI 180

Query: 181 LLQGSAWLQMKTTSHVHQRARNVAQLTGLLTAVCFVAAGFWVQH-IDGYMIVGAIDGNAA 239
           + QG+ +LQM+T   +H R R  AQ+  L+T VCF  AG WV + IDGY++   +D  AA
Sbjct: 181 ITQGATYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAA 240

Query: 240 SNPLNKEVIREAGAWLHNFEQVPVLWLAPALGVLMPLLSVLASRLDKGGLAFLTSSLGNA 299
           SNPLNKEV+REAGAWL NF   P+LW  PALGV++PLL++L +R+DK   AF+ SSL  A
Sbjct: 241 SNPLNKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLA 300

Query: 300 GVIFTAGFAMFPFVMPSSLNPAHSLTMWDATSSKLTLELMTVVAVVMVPIILGYTIWSYY 359
            +I TAG AMFPFVMPSS     SLTMWDATSS+LTL +MT VAVV+VPIIL YT W Y+
Sbjct: 301 CIILTAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYW 360

Query: 360 KMFGRLDDKFIEDNKNSLY 378
           KMFGR+  + IE N +SLY
Sbjct: 361 KMFGRITKEDIERNTHSLY 379