Pairwise Alignments

Query, 450 a.a., protein TolB from Vibrio cholerae E7946 ATCC 55056

Subject, 433 a.a., translocation protein TolB from Pseudomonas simiae WCS417

 Score =  347 bits (890), Expect = e-100
 Identities = 184/450 (40%), Positives = 279/450 (62%), Gaps = 30/450 (6%)

Query: 5   LVFVLMLIGTGFSNIANAALELVITDGIDSARPIAIVPFKWEGATKLPEDVSAVIASDLQ 64
           LV +  + G   ++  N    +++T G D A PIA+VPF W+G + LP+D++ +++ DL+
Sbjct: 9   LVVICCMAGIAAADEKN----ILVTSGSDRATPIAVVPFGWQGGSVLPDDMAQIVSDDLR 64

Query: 65  RSGKFSPVPTSKMPQTPYSEEQVNFGKWTSMGVDSLLTGTITQNAEGSYVISYQLVDIVR 124
            SG ++P+P   M   P    +V F  W ++G   L+ G IT  A G   I+Y L ++  
Sbjct: 65  NSGYYAPIPKGNMISQPNQASEVVFRDWKAVGAQYLMVGNITP-AGGRLQITYTLFNVAT 123

Query: 125 GQLTQGQSKALSQDGQLVLSKDHVLFNKVATVPASRMREYAHRIADLVYEELTGERGAFL 184
            Q                     VL   V+   A ++R+ AH I+D  +E+LTG +GAF 
Sbjct: 124 EQ--------------------QVLTGSVSGT-AEQIRDMAHYISDQSFEKLTGIKGAFS 162

Query: 185 TRIAYVVVN--DKDPYPYQLRIADYDGYNERLVLRSKQPLMSPAWSPDGQTLAYVSFQNG 242
           TR+ YV       D   Y L+ +DYDG     +L+S++P++SP ++PDG+ +AYVSF+  
Sbjct: 163 TRLLYVTAERFSVDNTRYTLQRSDYDGARAVTLLQSREPILSPRFAPDGKRIAYVSFEQK 222

Query: 243 QAEIYMMNIYSGKREKLTSFPRHNGAPRFSPDGKTLALVLSKTGNLQVYTMDLATRRLTE 302
           +  I++ +I +G+RE++T+F   NGAP +SPDG  LA VLSK GN  +Y M++A+R+++ 
Sbjct: 223 RPRIFVQHIDTGRREQITNFEGLNGAPAWSPDGSRLAFVLSKDGNPDIYVMNMASRQISR 282

Query: 303 VTSGRSNNTEPFWHPDGKSLIFTSDRGGKPQIYQVNLSGGETKRLTWQGSQNLGGQITPD 362
           VTSG   NTEPFW  DG ++ FTSDRGGKPQ+Y+ N++GG  +R+T+ G+ N   +++ D
Sbjct: 283 VTSGPGINTEPFWGKDGSTIYFTSDRGGKPQVYKANVNGGGAERVTFIGNYNANPKLSAD 342

Query: 363 GKFLVMVNRSD--SGFNLAKQDLETGAMQILTKTLLDESPSIAPNGGMVIYSSIYNKANV 420
            K LVM++R D  + F +A QDL+ G ++ILT T LDES ++APNG MVIY++      V
Sbjct: 343 EKTLVMIHRQDGFTNFRVAAQDLQRGTVKILTDTNLDESATVAPNGTMVIYATRQQGRGV 402

Query: 421 LSMVSIDGRFKARLPATNGRVRAPAWSPFL 450
           L +VSI+GR +  LP   G VR P+WSP+L
Sbjct: 403 LMLVSINGRVRLPLPTAQGEVREPSWSPYL 432