Pairwise Alignments
Query, 450 a.a., protein TolB from Vibrio cholerae E7946 ATCC 55056
Subject, 1084 a.a., protease from Vibrio cholerae E7946 ATCC 55056
Score = 55.8 bits (133), Expect = 7e-12
Identities = 28/100 (28%), Positives = 54/100 (54%), Gaps = 4/100 (4%)
Query: 272 SPDGKTLALVLSKTGNLQVYTMDLATRRLTEVTSGRSNNTEPFWHPDGKSLIFTSDRGGK 331
SPDG+ +A + Q++ + +T + P W PD +S+ FT+DR G
Sbjct: 47 SPDGQKIAFTYAG----QIWLVPAQGGDAVALTESGVYSETPIWSPDSQSIAFTADRYGL 102
Query: 332 PQIYQVNLSGGETKRLTWQGSQNLGGQITPDGKFLVMVNR 371
++ +++ GGE++RLT+ G++++ + DG+ L +R
Sbjct: 103 GDVFILSIQGGESRRLTYHGAKDIPYAFSADGQQLYFSSR 142
Score = 43.1 bits (100), Expect = 4e-08
Identities = 42/188 (22%), Positives = 77/188 (40%), Gaps = 24/188 (12%)
Query: 226 AWSPDGQTLAYVSFQNGQAEIYMMNIYSGKREKLTSFPRHNGAPRFSPDGKTLALVLSKT 285
A SPDGQ +A+ +I+++ G LT ++ P +SPD +++A +
Sbjct: 45 ALSPDGQKIAFTY----AGQIWLVPAQGGDAVALTESGVYSETPIWSPDSQSIAFTADRY 100
Query: 286 GNLQVYTMDLATRRLTEVTSGRSNNTEPFWHPDGKSLIFTSDRGG-------------KP 332
G V+ + + +T + + + DG+ L F+S R G
Sbjct: 101 GLGDVFILSIQGGESRRLTYHGAKDIPYAFSADGQQLYFSSRRLGDDKANANVKQGSFMA 160
Query: 333 QIYQVNLSGGETKRLTWQGSQNLGGQITPDGKFLVMVNRSDSGFNLAKQDLETGAMQILT 392
Q+Y V +GG +R+ +L I+P ++ N+ +Q GA+ T
Sbjct: 161 QLYSVPAAGGREQRVLPIAISDLA--ISPSHSDILYTNQPSD-----EQPWRKGALSDAT 213
Query: 393 KTLLDESP 400
+ + SP
Sbjct: 214 RDIWQWSP 221
Score = 42.4 bits (98), Expect = 8e-08
Identities = 29/116 (25%), Positives = 54/116 (46%), Gaps = 2/116 (1%)
Query: 174 EELTGERGAFLTRIAYVVVNDKDPYPY--QLRIADYDGYNERLVLRSKQPLMSPAWSPDG 231
E+ T R +L IA K + Y Q+ + G + + S +P WSPD
Sbjct: 31 EDSTQARPTWLRDIALSPDGQKIAFTYAGQIWLVPAQGGDAVALTESGVYSETPIWSPDS 90
Query: 232 QTLAYVSFQNGQAEIYMMNIYSGKREKLTSFPRHNGAPRFSPDGKTLALVLSKTGN 287
Q++A+ + + G ++++++I G+ +LT + FS DG+ L + G+
Sbjct: 91 QSIAFTADRYGLGDVFILSIQGGESRRLTYHGAKDIPYAFSADGQQLYFSSRRLGD 146
Score = 38.1 bits (87), Expect = 1e-06
Identities = 15/52 (28%), Positives = 28/52 (53%)
Query: 297 TRRLTEVTSGRSNNTEPFWHPDGKSLIFTSDRGGKPQIYQVNLSGGETKRLT 348
T + T++T+ R + P W DG S+ + S++ G ++Q G E ++T
Sbjct: 223 TGKHTQITTFRGEDRNPVWSADGSSMYYLSEQAGSFNVWQQRFDGSEPVQIT 274
Score = 38.1 bits (87), Expect = 1e-06
Identities = 40/192 (20%), Positives = 74/192 (38%), Gaps = 23/192 (11%)
Query: 224 SPAWSPDGQTLAYVSFQNGQAEIYMMNIYSGKREKLTSFPR---------HNGAPRFSPD 274
+P WS DG ++ Y+S Q G ++ + ++T + G + D
Sbjct: 238 NPVWSADGSSMYYLSEQAGSFNVWQQRFDGSEPVQITDHQKLPVRFLSASLQGDLAYGFD 297
Query: 275 GKTLALVLSKTGNLQVYTMDLATRRLTEVTSGRSN------NTEPFWHPDGKSLIFTSDR 328
G+ L K G Q + ++ RR + + GR N TE P+ + +
Sbjct: 298 GEIWRL---KAGAKQAEKVPVSIRR-SAMPDGRHNVNFNLEATEMVVAPNAAEVAIVA-- 351
Query: 329 GGKPQIYQVNLSGGETKRLTWQGSQNLGGQITPDGKFLVMVNRSDSGFNLAKQDLETGAM 388
+ +Y V+L G T+R+T + DG L+ + + +NL + + G
Sbjct: 352 --RGDVYVVSLLSGLTQRITDTPEAERDVSFSSDGYRLIYASEREGSWNLYQSYVNDGGK 409
Query: 389 QILTKTLLDESP 400
+ + E P
Sbjct: 410 SFSSSLDIIEEP 421
Score = 33.9 bits (76), Expect = 3e-05
Identities = 37/203 (18%), Positives = 84/203 (41%), Gaps = 27/203 (13%)
Query: 228 SPDGQTLAYVSFQNGQAEIYMMNIYSGKREKLTSFPRHNGAPRFSPDGKTLALVLSKTGN 287
+P+ +A V+ + ++Y++++ SG +++T P FS DG L + G+
Sbjct: 341 APNAAEVAIVA----RGDVYVVSLLSGLTQRITDTPEAERDVSFSSDGYRLIYASEREGS 396
Query: 288 LQVY-------------TMDLATRRLTEVTSGRSNNTEPFWHPDGKSLIFTSDRGGKPQI 334
+Y ++D+ V + + +P + P+ K +++ +R ++
Sbjct: 397 WNLYQSYVNDGGKSFSSSLDIIEE---PVLTTEQDVIQPLYSPNLKRIVYRENR-NTLKV 452
Query: 335 YQVNLSGGET----KRLTWQGSQNLGGQITPDGKFLVMVNR--SDSGFNLAKQDLETGAM 388
Y + T L ++L Q +PD +++V +R S+ L K D +
Sbjct: 453 YDIEQDKTYTLLDAHALYSYFDKDLSYQWSPDSEYIVTRDRAMSNGDIQLLKFDGSEAPI 512
Query: 389 QILTKTLLDESPSIAPNGGMVIY 411
+ + +P + +G V +
Sbjct: 513 NLSQSGFSEFAPQFSADGQWVYW 535
Score = 26.6 bits (57), Expect = 0.004
Identities = 15/77 (19%), Positives = 34/77 (44%), Gaps = 7/77 (9%)
Query: 215 VLRSKQPLMSPAWSPDGQTLAYVSFQNGQAEIYMMNIYSGKREKLTSFPRHNGAPRFSPD 274
+L + QP W + + +I+ + +GK ++T+F + P +S D
Sbjct: 192 ILYTNQPSDEQPWRKG-------ALSDATRDIWQWSPLTGKHTQITTFRGEDRNPVWSAD 244
Query: 275 GKTLALVLSKTGNLQVY 291
G ++ + + G+ V+
Sbjct: 245 GSSMYYLSEQAGSFNVW 261