Pairwise Alignments

Query, 450 a.a., protein TolB from Vibrio cholerae E7946 ATCC 55056

Subject, 1067 a.a., hypothetical protein from Sphingobium sp. HT1-2

 Score = 60.5 bits (145), Expect = 3e-13
 Identities = 53/230 (23%), Positives = 101/230 (43%), Gaps = 33/230 (14%)

Query: 223 MSPAWSPDGQTLAYVSFQNGQAEIYMMNIYSGKREKLTSFPRHNGAPRFSPDGKTLALVL 282
           M P  SPDG+T+ +        +IY ++   G    L +       P FSPDGK  A + 
Sbjct: 45  MQPDMSPDGRTILFDLL----GDIYALDAGGGTARPLLTGMAFERNPVFSPDGKQFAFLS 100

Query: 283 SKTG--NLQVYTMDLATRRLTEVTSGRSNNTEPFWHPDGKSL-------------IFTSD 327
            ++G  NL +  +D    +        +  + P W PDG+S+             +F  D
Sbjct: 101 DRSGVTNLWIANVDGTGLKQLSQDQSLAIYSSPAWSPDGRSVYVSRTVHSILAFELFMYD 160

Query: 328 RGGKPQIYQVNLSGGETKRLTWQGSQN-LGGQITPDGKFLVMVNRSD--------SGFNL 378
           R G   I Q+  +G       W    N +G   TPDG++L    +            +++
Sbjct: 161 RDGGSGI-QITKAGSPD---NWDAKMNAMGAVATPDGRYLYYATKRGHTWTENDLPNWSI 216

Query: 379 AKQDLETGAMQILTKTLLDE-SPSIAPNGGMVIYSSIYNKANVLSMVSID 427
           A++DL++G  + + ++      P+++ +G ++ Y+S   + + L + +++
Sbjct: 217 ARRDLKSGQDETIIQSAGGAMRPALSHDGKLLAYASRQGQKDGLRLRNLE 266



 Score = 44.7 bits (104), Expect = 2e-08
 Identities = 20/53 (37%), Positives = 31/53 (58%), Gaps = 1/53 (1%)

Query: 225 PAWSPDGQTLAYVSF-QNGQAEIYMMNIYSGKREKLTSFPRHNGAPRFSPDGK 276
           P+WSPDG+++AYVS+       ++ +    G   +LT  P +   P F+PDGK
Sbjct: 396 PSWSPDGKSIAYVSWTAKDGGHVWTIPATGGTPRRLTQIPAYYSQPIFTPDGK 448



 Score = 34.7 bits (78), Expect = 2e-05
 Identities = 46/198 (23%), Positives = 82/198 (41%), Gaps = 41/198 (20%)

Query: 206 DYDGYNERLVLRSKQPLMSPAWSPDGQTLAYVSFQNGQAEIYMMNIYSGKREKLTSFPRH 265
           D     +  +++S    M PA S DG+ LAY S Q  +  + + N+ +G+ ++  +FP  
Sbjct: 220 DLKSGQDETIIQSAGGAMRPALSHDGKLLAYASRQGQKDGLRLRNLETGE-DRWIAFPID 278

Query: 266 NGA----------PRFSPDGKTLALVLSKTGNLQVYTMDLATRRLTEV-----------T 304
                        PRFS      A+++S  G ++   +D+A+ +++++            
Sbjct: 279 RDGQDGGYYADLLPRFSFLPGDKAMLMSVGGGIR--RLDIASGKISDIPFTAPVQLGLGP 336

Query: 305 SGRSNNTE------------PFWHPDGKSLIFTSDRGGKPQIYQVNLSGGETKRLTWQGS 352
             R   TE            P   PDG S+ FT+  G   Q    N++    KR+    +
Sbjct: 337 LTRVRQTEETGPVRVRVVQAPRQSPDGGSVAFTALGGLYVQKLTANMT---PKRIV--AA 391

Query: 353 QNLGGQITPDGKFLVMVN 370
                  +PDGK +  V+
Sbjct: 392 DAFQPSWSPDGKSIAYVS 409



 Score = 25.8 bits (55), Expect = 0.007
 Identities = 16/64 (25%), Positives = 28/64 (43%), Gaps = 2/64 (3%)

Query: 387 AMQILTKTLLDESPSIAPNGGMVIYSSIYNKANVLSMVSIDGRFKARLPATNGRV--RAP 444
           A  +LT    + +P  +P+G    + S  +    L + ++DG    +L          +P
Sbjct: 74  ARPLLTGMAFERNPVFSPDGKQFAFLSDRSGVTNLWIANVDGTGLKQLSQDQSLAIYSSP 133

Query: 445 AWSP 448
           AWSP
Sbjct: 134 AWSP 137