Pairwise Alignments

Query, 450 a.a., protein TolB from Vibrio cholerae E7946 ATCC 55056

Subject, 725 a.a., hypothetical protein from Sphingobium sp. HT1-2

 Score = 51.6 bits (122), Expect = 8e-11
 Identities = 61/242 (25%), Positives = 95/242 (39%), Gaps = 68/242 (28%)

Query: 194 DKDPYPYQLRIADYDGYNE-RLVLRSKQPLMSPAWSPDGQTLAYVSFQNGQ--AEIYMMN 250
           +KD     L I   DG    R +  +K     PAW+PD + +A+ + + G   A+IY+++
Sbjct: 71  EKDGAVSDLWIVPADGSAAPRRLTATKAGEGDPAWAPDSRRIAFSAKREGDDVAQIYVLD 130

Query: 251 IYSGKREKLTSFPRHNGAPRFSPDGKTL------------ALVLSKTG--------NLQV 290
           +  G+  ++TS P   G P + PDG+ +            A    KT         N++V
Sbjct: 131 LAGGEARRVTSIPTGAGKPIWRPDGQAILFESAVYPGAMDAAANKKTAEERKARKYNMRV 190

Query: 291 YT--------------------MDLA----TRRLTEVTS-----GRSNNTE--------P 313
           Y                       LA     R +  VT      G   N +        P
Sbjct: 191 YEHFPIRYWNDWLDDKRPSLWLQPLAEGAPARDILSVTKLAQADGFGGNAQSDGGMTLAP 250

Query: 314 FWHPDGKSLIF--TSDRGGKPQ------IYQVNLSGGETKRLTWQGSQNLGGQITPDGKF 365
            W PDGK +IF  T++R           +Y++   GGE   +T    +    + TPDGK 
Sbjct: 251 VWSPDGKEIIFTATTERWNAAHARVNFGLYRMPADGGEPVLVTPTPGEYGDMKFTPDGKS 310

Query: 366 LV 367
           L+
Sbjct: 311 LI 312



 Score = 50.4 bits (119), Expect = 2e-10
 Identities = 34/94 (36%), Positives = 49/94 (52%), Gaps = 15/94 (15%)

Query: 267 GAPRFSPDGKTLALVLSK--------TGNLQVYTMD--LATRRLTEVTSGRSNNTEPFWH 316
           GAP  SPDGK +   LS+          +L +   D   A RRLT   +G     +P W 
Sbjct: 50  GAPVASPDGKWVVYALSEPSYEKDGAVSDLWIVPADGSAAPRRLTATKAGEG---DPAWA 106

Query: 317 PDGKSLIFTSDRGGK--PQIYQVNLSGGETKRLT 348
           PD + + F++ R G    QIY ++L+GGE +R+T
Sbjct: 107 PDSRRIAFSAKREGDDVAQIYVLDLAGGEARRVT 140



 Score = 50.4 bits (119), Expect = 2e-10
 Identities = 32/112 (28%), Positives = 55/112 (49%), Gaps = 9/112 (8%)

Query: 224 SPAWSPDGQTLAYV----SFQNGQAEIYMMNIY---SGKREKLTSFPRHNGAPRFSPDGK 276
           +P  SPDG+ + Y     S++   A   +  +    S    +LT+     G P ++PD +
Sbjct: 51  APVASPDGKWVVYALSEPSYEKDGAVSDLWIVPADGSAAPRRLTATKAGEGDPAWAPDSR 110

Query: 277 TLALVLSKTGN--LQVYTMDLATRRLTEVTSGRSNNTEPFWHPDGKSLIFTS 326
            +A    + G+   Q+Y +DLA      VTS  +   +P W PDG++++F S
Sbjct: 111 RIAFSAKREGDDVAQIYVLDLAGGEARRVTSIPTGAGKPIWRPDGQAILFES 162



 Score = 45.1 bits (105), Expect = 8e-09
 Identities = 36/136 (26%), Positives = 59/136 (43%), Gaps = 17/136 (12%)

Query: 223 MSPAWSPDGQTLAYVS----FQNGQAEI----YMMNIYSGKREKLTSFPRHNGAPRFSPD 274
           ++P WSPDG+ + + +    +    A +    Y M    G+   +T  P   G  +F+PD
Sbjct: 248 LAPVWSPDGKEIIFTATTERWNAAHARVNFGLYRMPADGGEPVLVTPTPGEYGDMKFTPD 307

Query: 275 GKTLALVLSKTGNLQVYTMDLATR-------RLTEVTSGRSNNTEPF-WHPDGKSLIFTS 326
           GK+L    +  G  +VY +    R         T +T       + +   PD +SL  T 
Sbjct: 308 GKSLIFKYNSQGE-EVYDLARLHRVAWPAGGAATLLTGAFDREVDGYAVTPDSRSLYLTV 366

Query: 327 DRGGKPQIYQVNLSGG 342
              G   +Y+V +SGG
Sbjct: 367 PDAGMENLYRVPVSGG 382