Pairwise Alignments

Query, 450 a.a., protein TolB from Vibrio cholerae E7946 ATCC 55056

Subject, 398 a.a., tolB protein precursor, periplasmic protein involved in the tonb-independent uptake of group A colicins from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  287 bits (735), Expect = 4e-82
 Identities = 160/416 (38%), Positives = 239/416 (57%), Gaps = 32/416 (7%)

Query: 37  PIAIVPFKWEGATKLPEDVSAVIASDLQRSGKFSPVP--TSKMPQTPYSEEQVNFGKWTS 94
           P ++V F+   A    E+++A++ +DL+RSG+F  V   +  + +T     + + G W  
Sbjct: 12  PFSVVGFRGNDAAS--ENIAAIVRADLERSGQFRFVDPISGGLDET----SRPDLGPWRE 65

Query: 95  MGVDSLLTGTITQNAEGSYVISYQLVDIVRGQLTQGQSKALSQDGQLVLSKDHVLFNKVA 154
            G DSLLTG++++ A+G + + ++L D+VRGQ   G S                      
Sbjct: 66  RGSDSLLTGSVSRLADGRFDVRFRLWDVVRGQDLGGLSYP-------------------- 105

Query: 155 TVPASRMREYAHRIADLVYEELTGERGAFLTRIAYVVVNDKDPYPYQLRIADYDGYNERL 214
            V A  +R  AHRIAD V+E++TG +G F TRIAYV    K    Y L +AD DG N R 
Sbjct: 106 -VGAQDLRLAAHRIADHVFEKITGVKGVFSTRIAYVT---KAGQRYNLWVADADGENARA 161

Query: 215 VLRSKQPLMSPAWSPDGQTLAYVSFQNGQAEIYMMNIYSGKREKLTSFPRHNGAPRFSPD 274
            L S +P++SP+W+P G  LAYVSF+  +  IY  ++ +GKR  L +F   N AP +SPD
Sbjct: 162 ALTSPEPIISPSWAPGGGQLAYVSFEARKPVIYAHDVATGKRRLLANFKGSNSAPSWSPD 221

Query: 275 GKTLALVLSKTGNLQVYTMDLATRRLTEVTSGRSNNTEPFWHPDGKSLIFTSDRGGKPQI 334
           G+++   LS +GN Q+YTMD        ++   S +TEP + PDGKS+ F SDRGG PQ+
Sbjct: 222 GRSVVATLSLSGNAQIYTMDANGGEPRRLSQSASIDTEPVFSPDGKSIYFVSDRGGSPQV 281

Query: 335 YQVNLSGGETKRLTWQGSQNLGGQITPDGKFLVMVNRSDSGFNLAKQDLETGAMQILTKT 394
           Y+++  GG  +RLT+ G+ N+    +PDG++L  ++R +  F L   DL +G +  L+++
Sbjct: 282 YRMSAQGGNAQRLTFTGNYNISPAPSPDGRWLAFISRINGAFRLHVMDLGSGTVTALSES 341

Query: 395 LLDESPSIAPNGGMVIYSSIYNKANVLSMVSIDGRFKARLPATNGRVRAPAWSPFL 450
             DESPS A N  M+IY++       L   ++DGR K RL    G +R P W PFL
Sbjct: 342 SGDESPSFAANSRMIIYATRDRGQEALMTTTVDGRIKTRLAGAQGDIREPEWGPFL 397