Pairwise Alignments
Query, 450 a.a., protein TolB from Vibrio cholerae E7946 ATCC 55056
Subject, 1089 a.a., Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system from Echinicola vietnamensis KMM 6221, DSM 17526
Score = 53.1 bits (126), Expect = 4e-11
Identities = 50/185 (27%), Positives = 79/185 (42%), Gaps = 15/185 (8%)
Query: 236 YVSFQNGQAEIYMMNIYSGKREKLTSFPRHNGAPRFSPDGKTLALVLSKTGNLQVYTMDL 295
+++F G +I+++ G +LT+ P+FSPDG +A GN VY M
Sbjct: 37 HITFSYG-GDIWIVPKTGGLANRLTTSKGTESFPKFSPDGSKVAFSGVYNGNSDVYVMPF 95
Query: 296 ATRRLTEVTSGRSNNTEPFWHPDGKSLIFTSDRGGKP----QIYQVNLSGGETKRLTWQG 351
+T ++ W+ DG ++F S R + Q Y+V++ GG ++L
Sbjct: 96 QGGMPQRLTYHGMSDRMVDWYGDGNHILFASSRESEKQRYNQFYKVSVDGGLPEKLPVPY 155
Query: 352 SQNLGGQITPDGKFLVMVNRSDSGFNLAKQDLETGAMQILTKTLLDESPSIAPNGGMVIY 411
+ G I+PDG + +S F K+ A I T L A N I
Sbjct: 156 GE--FGMISPDGNKIAYTPKS-RAFRTWKRYKGGMATDIFTFDL-------ASNASENIS 205
Query: 412 SSIYN 416
+SIYN
Sbjct: 206 NSIYN 210
Score = 50.8 bits (120), Expect = 2e-10
Identities = 65/260 (25%), Positives = 101/260 (38%), Gaps = 36/260 (13%)
Query: 162 REYAHRIADLVYEELTGERGAFLTRIAYVVVNDKDPYPYQLRIADYDGYNERLVLRSKQP 221
+E R V+ G R F R V KD + + G ER
Sbjct: 302 KENVKRYIQNVWPSYDGNRAVFEARGELFSVPAKDGPV--INLTQSSGVAERY------- 352
Query: 222 LMSPAWSPDGQTLAYVSFQNGQAEIYMMNIYSGKREKLTSFPRHNGAPRF----SPDGKT 277
PAWSPDG+ +AY S + G+ E+ + ++ +G EK S + R+ SPD K
Sbjct: 353 ---PAWSPDGRYVAYWSDRTGEYELTIKDLKNGGAEKTLS--AYGAGYRYQLYWSPDSKK 407
Query: 278 LALVLSKTGNLQVYTMDLATRRLTEVTSGRS------NNTEPFWHPDGKSLIFTSDRGGK 331
+A V + +Y D + T V +S +N W PD + L F + +
Sbjct: 408 VAFV---DKAMDIYVYDKEKDKTTHVDKQKSLFQYGLDNFSVSWSPDSRYLAFEKNLTNQ 464
Query: 332 PQIYQV-NLSGGETKRLTWQGSQNLGGQITPDGKFLVMVNRSDSGFNLAKQDLE-----T 385
V ++ ++T + P+GK+L + D F+ D E
Sbjct: 465 HNAIAVFDIEEEALHQITSGFYSDNNPVFGPEGKYLYCLTNRD--FDPVYSDFEGTWVYA 522
Query: 386 GAMQILTKTLLDESPS-IAP 404
A Q+ LL E+ S +AP
Sbjct: 523 NATQLAAIPLLKETASPLAP 542
Score = 38.9 bits (89), Expect = 8e-07
Identities = 67/308 (21%), Positives = 111/308 (36%), Gaps = 103/308 (33%)
Query: 225 PAWSPDGQTLAYVSFQNGQAEIYMMNIYSGKREKLTSF---------------------- 262
P +SPDG +A+ NG +++Y+M G ++LT
Sbjct: 69 PKFSPDGSKVAFSGVYNGNSDVYVMPFQGGMPQRLTYHGMSDRMVDWYGDGNHILFASSR 128
Query: 263 ----PRHN---------GAPR-----------FSPDGKTLALVLSKTG-----------N 287
R+N G P SPDG +A
Sbjct: 129 ESEKQRYNQFYKVSVDGGLPEKLPVPYGEFGMISPDGNKIAYTPKSRAFRTWKRYKGGMA 188
Query: 288 LQVYTMDLATRRLTEVTSGRSNNTEPFWHPDGKSLIFTSDRGG--KPQIYQVNLSGGETK 345
++T DLA+ +++ N+ P W D + F SDRG + IY +L+ E
Sbjct: 189 TDIFTFDLASNASENISNSIYNDEFPMWTAD--KIYFLSDRGAHQRNNIYSYDLATKEIA 246
Query: 346 RLTWQGSQNLGGQITPD-GKFLVMVNRSDSGFNLAKQDLETGAMQILTKTLLDESPSIAP 404
++T + ++ + P GK ++ +G + DL +G + ++ + + ++ P
Sbjct: 247 QITDFSAYDV---LFPSIGKDEIVFT---AGGEIYLLDLSSGEFEAVSIQVSSDVTALMP 300
Query: 405 NGGMVIYSSIYNKANVLSMV-----SIDGR---FKAR-----LPATNGRV---------- 441
K NV + S DG F+AR +PA +G V
Sbjct: 301 -----------RKENVKRYIQNVWPSYDGNRAVFEARGELFSVPAKDGPVINLTQSSGVA 349
Query: 442 -RAPAWSP 448
R PAWSP
Sbjct: 350 ERYPAWSP 357
Score = 37.7 bits (86), Expect = 2e-06
Identities = 32/145 (22%), Positives = 59/145 (40%), Gaps = 9/145 (6%)
Query: 273 PDGKTLALVLSKTGNLQVY--TMDLATRRLTEVTSGRSNNTEPFWHPDGKSLIFTSDRGG 330
PD + S G++ + T LA R +T+ + + P + PDG + F+ G
Sbjct: 31 PDVSDTHITFSYGGDIWIVPKTGGLANR----LTTSKGTESFPKFSPDGSKVAFSGVYNG 86
Query: 331 KPQIYQVNLSGGETKRLTWQGSQNLGGQITPDGKFLVMVNRSDS---GFNLAKQDLETGA 387
+Y + GG +RLT+ G + DG ++ + +S +N + G
Sbjct: 87 NSDVYVMPFQGGMPQRLTYHGMSDRMVDWYGDGNHILFASSRESEKQRYNQFYKVSVDGG 146
Query: 388 MQILTKTLLDESPSIAPNGGMVIYS 412
+ E I+P+G + Y+
Sbjct: 147 LPEKLPVPYGEFGMISPDGNKIAYT 171
Score = 25.8 bits (55), Expect = 0.007
Identities = 12/48 (25%), Positives = 23/48 (47%)
Query: 387 AMQILTKTLLDESPSIAPNGGMVIYSSIYNKANVLSMVSIDGRFKARL 434
A ++ T + P +P+G V +S +YN + + ++ G RL
Sbjct: 56 ANRLTTSKGTESFPKFSPDGSKVAFSGVYNGNSDVYVMPFQGGMPQRL 103