Pairwise Alignments

Query, 450 a.a., protein TolB from Vibrio cholerae E7946 ATCC 55056

Subject, 1111 a.a., hypothetical protein from Alteromonas macleodii MIT1002

 Score = 59.7 bits (143), Expect = 5e-13
 Identities = 55/208 (26%), Positives = 91/208 (43%), Gaps = 39/208 (18%)

Query: 228 SPDGQTLAYVSFQNGQAEIYMMNIYSGKREKLTSFPRHNGAPRFSPDGKTLALVLSKTGN 287
           +P+G+ + +        ++Y +++  G    LT     N  P  SPDGK +A +  K G 
Sbjct: 69  APNGEFMVFDML----GDLYKVSMSGGDATPLTQDFAWNIHPSISPDGKQIAFISDKDGL 124

Query: 288 LQVYTMDLATRRLTEVTSGRSNNT-EPFWHPDGKSLIFT----SDRG-GKPQIYQVNLSG 341
             V+ MD+    L +VT  +SN    P W PDG+ L+ T    S R     +I+  + SG
Sbjct: 125 SNVWVMDIDGSNLRQVTKEKSNLIHSPKWSPDGEYLVVTKGIMSSRSIPAGEIWMYHKSG 184

Query: 342 GETKRLTWQGS-----QNLGGQI-TPDGKFLVMVNRSDSG-------------FNLAKQD 382
           G+  ++  + S     QN+   + + DGK++     +  G             F + + D
Sbjct: 185 GDGLQIKARNSGKRDQQNIADPVFSHDGKYIYFTENTVPGARFEYNRDPLEGIFAITRYD 244

Query: 383 LETGAMQILTKTLLDESPSIAPNGGMVI 410
            ETG          +ES  I+  GG V+
Sbjct: 245 RETG----------EESRYISGTGGAVV 262



 Score = 49.3 bits (116), Expect = 6e-10
 Identities = 49/196 (25%), Positives = 92/196 (46%), Gaps = 25/196 (12%)

Query: 225 PAWSPDGQTLAYVSFQNGQAEIYMMNIYSGKREKLTSFPRHN-GAPRFSPDGKTLAL--- 280
           P+ SPDG+ +A++S ++G + +++M+I      ++T    +   +P++SPDG+ L +   
Sbjct: 106 PSISPDGKQIAFISDKDGLSNVWVMDIDGSNLRQVTKEKSNLIHSPKWSPDGEYLVVTKG 165

Query: 281 VLSK----TGNLQVYTMD----LATRRLTEVTSGRSNNTEPFWHPDGKSLIFTSDR--GG 330
           ++S      G + +Y       L  +        + N  +P +  DGK + FT +   G 
Sbjct: 166 IMSSRSIPAGEIWMYHKSGGDGLQIKARNSGKRDQQNIADPVFSHDGKYIYFTENTVPGA 225

Query: 331 KPQIYQVNLSG----GETKRLTWQGSQNL---GGQI----TPDGKFLVMVNRSDSGFNLA 379
           + +  +  L G        R T + S+ +   GG +    +PDGK++  V R      L 
Sbjct: 226 RFEYNRDPLEGIFAITRYDRETGEESRYISGTGGAVVPTPSPDGKYIAFVRRVKDRTALF 285

Query: 380 KQDLETGAMQILTKTL 395
            +D++TG    LT  L
Sbjct: 286 IKDIKTGVETPLTLEL 301



 Score = 39.7 bits (91), Expect = 5e-07
 Identities = 38/175 (21%), Positives = 74/175 (42%), Gaps = 17/175 (9%)

Query: 209 GYNERLVLRSKQPLMSPAWSPDGQTLAYVSFQNGQ-AEIYMMNIYSGKREKLTSFPRHNG 267
           G  +RL  ++      P +S DG+++ Y ++ +     + +++   GK + +T  P H  
Sbjct: 406 GKIKRLTKQNDHDEYYPRFSNDGKSIVYTTWNDQDLGTVRVVSARGGKGKVITQQPGHYI 465

Query: 268 APRFSPDGKTLALVLSKTGNL---------QVYTMDLATRRLTEVTSGRSNNTEPFWHPD 318
            P FS DG+ +       G L          +Y  DL    + +V+ G  N     +  +
Sbjct: 466 EPSFSADGEKVVFRKFTGGYLLDPKYSVEPGIYVADLEEDTVEKVSEGGYN---AHFAGN 522

Query: 319 GKSLIFTSDRGG----KPQIYQVNLSGGETKRLTWQGSQNLGGQITPDGKFLVMV 369
              + FT   GG    + Q+  VNL G + +   +   +    +++ D K++  V
Sbjct: 523 DDRVYFTESAGGEAYYETQLSSVNLKGNDKRTHLYGADKVSEYKLSHDKKWVAFV 577



 Score = 32.0 bits (71), Expect = 1e-04
 Identities = 28/116 (24%), Positives = 50/116 (43%), Gaps = 11/116 (9%)

Query: 335 YQVNLSGGETKRLTWQGSQNLGGQITPDGKFLVMVNRSDSGFNLAKQDLETGAMQILTKT 394
           Y +N    +T   TW         + P+G+F+V     D    L K  +  G    LT+ 
Sbjct: 49  YALNEVTIKTNETTWSSLD-----VAPNGEFMVFDMLGD----LYKVSMSGGDATPLTQD 99

Query: 395 LL-DESPSIAPNGGMVIYSSIYNKANVLSMVSIDG-RFKARLPATNGRVRAPAWSP 448
              +  PSI+P+G  + + S  +  + + ++ IDG   +      +  + +P WSP
Sbjct: 100 FAWNIHPSISPDGKQIAFISDKDGLSNVWVMDIDGSNLRQVTKEKSNLIHSPKWSP 155