Pairwise Alignments

Query, 736 a.a., histidine kinase from Vibrio cholerae E7946 ATCC 55056

Subject, 995 a.a., PAS domain S-box protein from Magnetospirillum magneticum AMB-1

 Score =  234 bits (598), Expect = 1e-65
 Identities = 145/389 (37%), Positives = 213/389 (54%), Gaps = 24/389 (6%)

Query: 343 LEAEKVKAQASTKAKSAFLATLSHEIRTPMNGVLGTAQILLKDELTSKQRQHLTSLYESG 402
           L   K  A+A+ KAKS FLA +SHEIRTPMNG++G A + L  EL +KQR H+ S+ +S 
Sbjct: 452 LRESKSVAEAANKAKSLFLANMSHEIRTPMNGIIGMAHLALGGELPAKQRHHIQSIKQSA 511

Query: 403 EHMMSLLNEILDYSKIEQGKFELDHSAFPLKSIIGSIKSIYSSLCVEKGLKFQLNSEITD 462
           + ++ ++N+ILD SK E GK  +D + F L ++I    S+ ++   EK L   +      
Sbjct: 512 QRLLGIINDILDLSKAEAGKVVIDAAPFDLANLIDEAISVVAAQASEKRLPINVRIASEV 571

Query: 463 GRWYYGDKARLRQIIFNLLSNAVKFTEAGFVAIGLSEE--SCDEENYLIIKVQDTGIGIA 520
            R   GD  R+RQI+ N LSNAVKFT +G + + +  E         L   V DTG G+ 
Sbjct: 572 PRGVIGDPLRIRQILLNYLSNAVKFTSSGGIDVDVQIEGGKTAPPTKLRFAVSDTGCGLT 631

Query: 521 QESLGRIFRPFEQAESHTTRRFGGTGLGLAIVKQIAELMNGTVLVQSEVGQGSC--FKVR 578
            E    +F+ F+QAE+ T+ +FGGTGLGLAI +Q+AELM G   V+S+ G GS   F V+
Sbjct: 632 PEQQATLFQSFQQAEASTSAKFGGTGLGLAIARQLAELMGGQAGVESQYGSGSTFWFTVQ 691

Query: 579 VKLAI--TEPVTEDVKPTKA---------KTYPGLRVLIVEDNRTNIMILEAFMRNKGFE 627
            + A+   +  ++ + P K              G +VL+ ED+ TN M+    +   G  
Sbjct: 692 FQGAVDGVDCPSKFLSPIKIHNNFAHQDHSILQGAQVLLAEDDLTNQMVAVGLLEAAGML 751

Query: 628 CHSVMDGVQAITALQESSFDLVLMDNHMPLKDGIQATREIRQ----LPLPQAKILLFGCT 683
              V +G  A+       +++VLMD  MP  DGI ATR IR+    L LP     +   T
Sbjct: 752 VDVVGNGAAAVEKAASGKYEIVLMDVRMPGMDGITATRLIRENVELLDLP-----IVAMT 806

Query: 684 ADVFKDTRDKMLSAGADDIIAKPIAEHEL 712
           A+   + +D+ L+AG  D ++KP    +L
Sbjct: 807 ANAMNEHKDECLAAGMSDFVSKPFQPEQL 835