Pairwise Alignments

Query, 736 a.a., histidine kinase from Vibrio cholerae E7946 ATCC 55056

Subject, 1021 a.a., HAMP domain-containing protein from Magnetospirillum magneticum AMB-1

 Score =  197 bits (501), Expect = 2e-54
 Identities = 117/269 (43%), Positives = 160/269 (59%), Gaps = 3/269 (1%)

Query: 343 LEAEKVKAQASTKAKSAFLATLSHEIRTPMNGVLGTAQILLKDELTSKQRQHLTSLYESG 402
           L   K  A+A+  AKSAFLA +SHEIRTPMNGV+G  ++L   EL + QR  +++  ESG
Sbjct: 495 LTIAKENAEAANVAKSAFLAAMSHEIRTPMNGVIGMLELLDHTELDNDQRDLVSTTRESG 554

Query: 403 EHMMSLLNEILDYSKIEQGKFELDHSAFPLKSIIGSIKSIYSSLCVEKGLKFQLNSEITD 462
             ++ +L+++LD+SKIE G+ EL+     L  I+ S+    +     K L      +   
Sbjct: 555 LSLLRILDDVLDFSKIEAGRLELEQVPVRLDRIVESVVQTVAPAAAAKSLTLSAFVDPGL 614

Query: 463 GRWYYGDKARLRQIIFNLLSNAVKFTEAGFVAIGLSEESCDEE--NYLIIKVQDTGIGIA 520
                 D  RLRQI+FNL  NAVKFT  G VAI +     D +    L I+V DTGIGI 
Sbjct: 615 PPVLLADPVRLRQILFNLAGNAVKFTAQGLVAIHMGNGGTDGQGRQILSIRVADTGIGID 674

Query: 521 QESLGRIFRPFEQAESHTTRRFGGTGLGLAIVKQIAELMNGTVLVQSEVGQGSCFKVRVK 580
                R+F+PF QAES TTRRFGGTGLGL+I +++ +LM+GT   +SE G GS F  R+ 
Sbjct: 675 SSLRDRLFQPFTQAESSTTRRFGGTGLGLSITRRLVDLMDGTAGFESEPGVGSSFWCRLP 734

Query: 581 LAITEPVTEDVKPTKAKT-YPGLRVLIVE 608
           L + E V  +    +  T + GLR+LIV+
Sbjct: 735 LPVAESVPPETPIGEQTTDFIGLRILIVD 763



 Score = 54.7 bits (130), Expect = 2e-11
 Identities = 32/123 (26%), Positives = 56/123 (45%), Gaps = 1/123 (0%)

Query: 595  KAKTYPGLRVLIVEDNRTNIMILEAFMRNKGFECHSVMDGVQAITALQESSFDLVLMDNH 654
            ++  + G  +L+ ED+  N  ++   +   GF      DG  A+ A +   + L+L D H
Sbjct: 889  RSTAWTGAPILVAEDHPVNQQVIRRQLHLLGFPAEVFPDGAAALAAWRARPYCLILTDCH 948

Query: 655  MPLKDGIQATREIR-QLPLPQAKILLFGCTADVFKDTRDKMLSAGADDIIAKPIAEHELD 713
            MP+ DG Q T  IR +         +   TA+      ++ + AG D  ++KP+    L 
Sbjct: 949  MPIMDGFQLTAAIRAEEDGTTRHTPILALTANALAGEAERCVQAGMDSYLSKPVELPHLR 1008

Query: 714  MAL 716
             A+
Sbjct: 1009 AAI 1011