Pairwise Alignments

Query, 736 a.a., histidine kinase from Vibrio cholerae E7946 ATCC 55056

Subject, 1258 a.a., PAS domain S-box protein from Magnetospirillum magneticum AMB-1

 Score =  233 bits (595), Expect = 3e-65
 Identities = 133/366 (36%), Positives = 219/366 (59%), Gaps = 13/366 (3%)

Query: 349 KAQASTKAKSAFLATLSHEIRTPMNGVLGTAQILLKDELTSKQRQHLTSLYESGEHMMSL 408
           +A+A+++AK+ FLA +SHEIRTPMN ++G + + LK EL  +QR ++  + +SG+H++ +
Sbjct: 605 RAEAASQAKADFLANMSHEIRTPMNAIIGMSHLALKTELNPRQRDYVRKIQQSGQHLLGI 664

Query: 409 LNEILDYSKIEQGKFELDHSAFPLKSIIGSIKSIYSSLCVEKGLK--FQLNSEITDGRWY 466
           +N+ILD+SKIE GK  ++ +A  L +++ ++ ++ S   + KGL+  F + S++ +    
Sbjct: 665 INDILDFSKIEAGKLSVEKTAVHLDTVLDNVANLISEKTIAKGLELIFDVASDVPND--M 722

Query: 467 YGDKARLRQIIFNLLSNAVKFTEAGFVAIGLS-EESCDEENYLIIKVQDTGIGIAQESLG 525
            GD  RL QI+ N  +NAVKFTE G + + +   E   E   L  +V+DTGIG++ E +G
Sbjct: 723 VGDPLRLGQILINYANNAVKFTETGEIVVAVRLAEDLGEAVRLRFEVRDTGIGLSAEQMG 782

Query: 526 RIFRPFEQAESHTTRRFGGTGLGLAIVKQIAELMNGTVLVQSEVGQGSCFKVRVKLAITE 585
           R+F+ F+QA++ TTR++GGTGLGLAI +++AELM+G V V+S+ G+GS F     L    
Sbjct: 783 RLFQSFQQADTSTTRKYGGTGLGLAISRKLAELMDGEVGVESQPGRGSTFWFTACLGKGR 842

Query: 586 PVTEDVKPTKAKTYPGLRVLIVEDNRTNIMILEAFMRNKGFECHSVMDGVQAITALQE-- 643
           P    V     +   G  +L+V+DN     +L   + +  F   +V  G  A+  ++E  
Sbjct: 843 PRRALVPKPDLR---GRHMLVVDDNENARAVLVDMLTSMSFRVEAVESGAAAVARVREVA 899

Query: 644 --SSFDLVLMDNHMPLKDGIQATREIRQLPLPQAKILLFGCTADVFKDTRDKMLSAGADD 701
               F++V +D  MP  DGI+  R I  L L     ++   TA   ++      SAG +D
Sbjct: 900 GAKPFEVVFLDWQMPGMDGIETARAILGLGLTSPPHMIM-VTAHGREEVMKAAESAGIED 958

Query: 702 IIAKPI 707
           ++ KP+
Sbjct: 959 VLIKPV 964



 Score = 75.1 bits (183), Expect = 2e-17
 Identities = 41/112 (36%), Positives = 62/112 (55%), Gaps = 2/112 (1%)

Query: 601  GLRVLIVEDNRTNIMILEAFMRNKGFECHSVMDGVQAITALQESSFDLVLMDNHMPLKDG 660
            GLRVL+ EDN  N  +    + + G E     +G  A+  +  + +D+VLMD  MP+ DG
Sbjct: 1004 GLRVLLAEDNDFNQQVATELLADGGVEVEVAENGKIAVDMVMAAPYDMVLMDMQMPVMDG 1063

Query: 661  IQATREIRQLPLPQAKILLFGCTADVFKDTRDKMLSAGADDIIAKPIAEHEL 712
            + ATREIR+L      ++    TA+  +  RD+  +AG +D + KPI   EL
Sbjct: 1064 VAATREIRRLGFGDLPVI--AMTANAMQADRDRCAAAGMNDYLTKPIDPDEL 1113