Pairwise Alignments

Query, 736 a.a., histidine kinase from Vibrio cholerae E7946 ATCC 55056

Subject, 1117 a.a., PAS domain S-box protein from Magnetospirillum magneticum AMB-1

 Score =  221 bits (563), Expect = 2e-61
 Identities = 136/376 (36%), Positives = 211/376 (56%), Gaps = 13/376 (3%)

Query: 343 LEAEKVKAQASTKAKSAFLATLSHEIRTPMNGVLGTAQILLKDELTSKQRQHLTSLYESG 402
           L   K  A+A  + KS FLAT+SHEIRTPMNGV+G   +LL   L+ +QR    ++ +SG
Sbjct: 466 LREAKEAAEAGNRTKSEFLATMSHEIRTPMNGVIGMTGLLLDTRLSEEQRHFAETIRDSG 525

Query: 403 EHMMSLLNEILDYSKIEQGKFELDHSAFPLKSIIGSIKSIYSSLCVEKGLKFQLNSEITD 462
           E +++++N+ILD+SK+E GK +LD++ F L  ++ S+  I +     KG++     +   
Sbjct: 526 ESLLTVINDILDFSKMEAGKLDLDYTEFELVPLVESVVDILAPRAHAKGIEIASLIDPRL 585

Query: 463 GRWYYGDKARLRQIIFNLLSNAVKFTEAGFVAIGLS-EESCDEENYLIIKVQDTGIGIAQ 521
                 D  RLRQ++ NL  NAVKFTE G V+I +S  +  D        V+DTGIGI  
Sbjct: 586 RMLVRSDPGRLRQVLMNLGGNAVKFTEKGGVSIEVSLLDGPDAPAMARFDVRDTGIGIPP 645

Query: 522 ESLGRIFRPFEQAESHTTRRFGGTGLGLAIVKQIAELMNGTVLVQSEVGQGSCFKVRVKL 581
           E+ GR+F  F Q ++ T RR+GGTGLGLAI +++AELM G V V+S VG+GS F + + L
Sbjct: 646 EAQGRLFSMFSQVDASTARRYGGTGLGLAISRRLAELMGGEVGVESAVGRGSRFWITLPL 705

Query: 582 AITEPVTEDVKPTKAKTYPGLRVLIVEDNRTNIMILEAFMRNKGFECHSVMD---GVQAI 638
            +  P     +        G RVL+V+DN  N  ++E  +R  G E H+ +D   G+  +
Sbjct: 706 ELLAP-----QSAAPPDLSGHRVLVVDDNPVNCDVIERQLRAFGVEVHACLDAGSGMGEL 760

Query: 639 T--ALQESSFDLVLMDNHMPLKDGIQATREIRQLPLPQAKILLFGCTADVFKDTRDKMLS 696
           T  A   + +++ ++D+ MP+  G +  R I  +P+     ++   +  +  D  D    
Sbjct: 761 TRAAAMGTPWEVAVVDSQMPVVTGSEMVRMIHAIPMLAGTRIVVTSSQGMPADQNDG--Q 818

Query: 697 AGADDIIAKPIAEHEL 712
              D  + KP+ +  L
Sbjct: 819 PAIDAFLHKPLRQSTL 834



 Score = 85.9 bits (211), Expect = 1e-20
 Identities = 46/119 (38%), Positives = 67/119 (56%)

Query: 602 LRVLIVEDNRTNIMILEAFMRNKGFECHSVMDGVQAITALQESSFDLVLMDNHMPLKDGI 661
           LR+L+ EDN  N  +    +R  G     V DG +A+ A++   +D+VLMD  MP  DG+
Sbjct: 868 LRILVAEDNPVNQQVALGLLRKLGHTVDVVGDGAEALEAVRLLPYDVVLMDVQMPEMDGL 927

Query: 662 QATREIRQLPLPQAKILLFGCTADVFKDTRDKMLSAGADDIIAKPIAEHELDMALEQHS 720
           +ATR IR LPL  A++ +   TA+  +        AG D  I+KPI  H+L  AL ++S
Sbjct: 928 EATRAIRALPLAAAQVPIVAMTANAMRGDDQMCFDAGMDGYISKPIDRHKLAEALAKYS 986