Pairwise Alignments

Query, 736 a.a., histidine kinase from Vibrio cholerae E7946 ATCC 55056

Subject, 1248 a.a., PAS domain S-box protein from Magnetospirillum magneticum AMB-1

 Score =  223 bits (567), Expect = 6e-62
 Identities = 128/367 (34%), Positives = 211/367 (57%), Gaps = 9/367 (2%)

Query: 347  KVKAQASTKAKSAFLATLSHEIRTPMNGVLGTAQILLKDELTSKQRQHLTSLYESGEHMM 406
            K  A+ + + KS FLA +SHEIRTPMN ++G A + LK +L  +Q+ ++  + +SG+H++
Sbjct: 710  KDAAEDAARTKSDFLANMSHEIRTPMNAIIGMAHLALKTDLDPRQKDYVRKIQQSGQHLL 769

Query: 407  SLLNEILDYSKIEQGKFELDHSAFPLKSIIGSIKSIYSSLCVEKGLKFQLNSEITDGRWY 466
             ++N+ILD+SKIE GK E++ +   L  ++ ++ ++ S     KGL+   +         
Sbjct: 770  GIINDILDFSKIEAGKLEVEATEIHLDKVLENVGNLISEKATAKGLELLFDVGAGVPLDL 829

Query: 467  YGDKARLRQIIFNLLSNAVKFTEAGFVAIGLS-EESCDEENYLIIKVQDTGIGIAQESLG 525
             GD  RL Q++ N  +NAVKFTEAG + + +   E    +  L  +V+DTGIG+  E   
Sbjct: 830  MGDALRLGQVLINYANNAVKFTEAGEIVVAVRLMEDLGPDVMLRFEVRDTGIGLTDEQKA 889

Query: 526  RIFRPFEQAESHTTRRFGGTGLGLAIVKQIAELMNGTVLVQSEVGQGSCFKVRVKLAITE 585
            R+F+ F QA++ TTR+FGGTGLGLAI K++AELM G+V V S  GQGS F    +L   +
Sbjct: 890  RLFQSFSQADTSTTRKFGGTGLGLAISKKLAELMGGSVGVDSVPGQGSTFWFTARLGKGK 949

Query: 586  PVTEDVKPTKAKTYPGLRVLIVEDNRTNIMILEAFMRNKGFECHSVMDGVQAITALQES- 644
            P    +   + +   G R+L+V+DN     +L   +    FE  +V  G +A+ A++++ 
Sbjct: 950  PRAPLIPEAELQ---GRRMLVVDDNENARAVLVDMLSAMSFEVDAVDSGAKALDAIRDAV 1006

Query: 645  ---SFDLVLMDNHMPLKDGIQATREIRQLPLPQAKILLFGCTADVFKDTRDKMLSAGADD 701
                +D+V +D  MP  DG++   +I  + LP    L+   TA   ++      +A   +
Sbjct: 1007 LDLPYDVVFLDWQMPDMDGLEVAEQIHSIRLPFPPHLIM-VTAYGREEIIKGAQAADIGE 1065

Query: 702  IIAKPIA 708
            ++ KP++
Sbjct: 1066 VLIKPVS 1072



 Score = 79.7 bits (195), Expect = 8e-19
 Identities = 44/107 (41%), Positives = 63/107 (58%), Gaps = 2/107 (1%)

Query: 601  GLRVLIVEDNRTNIMILEAFMRNKGFECHSVMDGVQAITALQESSFDLVLMDNHMPLKDG 660
            GL+VL+VEDN  N  +    +R+ G E     +G+ A+   +   +DL+LMD  MP+ DG
Sbjct: 1109 GLKVLLVEDNDLNQEVAGEILRDAGIEVEIADNGLIAVEKARAGVYDLILMDMQMPVMDG 1168

Query: 661  IQATREIRQLPLPQAKILLFGCTADVFKDTRDKMLSAGADDIIAKPI 707
            + ATREIR+  L    + +   TA+  +  RDK L AG +D IAKPI
Sbjct: 1169 VTATREIRR--LGHVDLPIIAMTANAMQADRDKCLEAGMNDHIAKPI 1213