Pairwise Alignments

Query, 736 a.a., histidine kinase from Vibrio cholerae E7946 ATCC 55056

Subject, 1616 a.a., PAS domain S-box protein from Magnetospirillum magneticum AMB-1

 Score =  237 bits (605), Expect = 3e-66
 Identities = 142/374 (37%), Positives = 218/374 (58%), Gaps = 13/374 (3%)

Query: 343  LEAEKVKAQASTKAKSAFLATLSHEIRTPMNGVLGTAQILLKDELTSKQRQHLTSLYESG 402
            L   K  A+ +T+ KS FLA +SHEIRTPMN ++G + + LK ELT +Q  ++  +  +G
Sbjct: 872  LTRAKELAEDATRMKSDFLANMSHEIRTPMNAIIGMSHLALKTELTPRQHDYVKKIQSAG 931

Query: 403  EHMMSLLNEILDYSKIEQGKFELDHSAFPLKSIIGSIKSIYSSLCVEKGLK--FQLNSEI 460
            +H++ ++N+ILD+SKIE GK  ++H+ F L  ++ +I ++ +     K L+  F + SE+
Sbjct: 932  QHLLGIINDILDFSKIEAGKLAVEHTDFELDKVLDNIANLLTEKTRAKSLELVFDIPSEV 991

Query: 461  TDGRWYYGDKARLRQIIFNLLSNAVKFTEAGFV-AIGLSEESCDEENYLIIKVQDTGIGI 519
               R   GD  RL QI+ N  +NAVKFTE G +  I   +E  + E  L   V+DTGIGI
Sbjct: 992  P--RTLVGDSLRLGQILINYANNAVKFTENGEIDIIARVKERSETEVLLYFAVRDTGIGI 1049

Query: 520  AQESLGRIFRPFEQAESHTTRRFGGTGLGLAIVKQIAELMNGTVLVQSEVGQGSCFKVRV 579
              E   R+F+ FEQA++ TTR+FGGTGLGLAI K++AELM G V V+SE G+GS F    
Sbjct: 1050 TAEQAARLFQSFEQADTSTTRKFGGTGLGLAISKRLAELMGGEVGVESEYGKGSTFWFTA 1109

Query: 580  KLAITEPVTEDVKPTKAKTYPGLRVLIVEDNRTNIMILEAFMRNKGFECHSVMDGVQAI- 638
            ++ I       + P  +    G RVL+V+DN     +L   M    F+  +   G++A+ 
Sbjct: 1110 RMGIGTVRKRRLLP--SPDLRGRRVLVVDDNDNARTVLADLMAGMTFQVTTRASGLEAVD 1167

Query: 639  ----TALQESSFDLVLMDNHMPLKDGIQATREIRQLPLPQAKILLFGCTADVFKDTRDKM 694
                 A+  + +++VL+D  MP  DGI+    +  L L  A  LL   TA   ++  + +
Sbjct: 1168 EVKRAAMAGTPYEIVLLDWRMPGMDGIETAHHLMALGLDPAPRLLM-VTAYGREEVLNLI 1226

Query: 695  LSAGADDIIAKPIA 708
              AG +D++ KP++
Sbjct: 1227 TEAGIEDVLIKPVS 1240



 Score = 80.9 bits (198), Expect = 5e-19
 Identities = 45/120 (37%), Positives = 69/120 (57%), Gaps = 1/120 (0%)

Query: 597  KTYPGLRVLIVEDNRTNIMILEAFMRNKGFECHSVMDGVQAITALQESSFDLVLMDNHMP 656
            +T  G R+L+VEDN  N  +    + + GF+     DG  A+  ++ +++D+VLMD  MP
Sbjct: 1274 ETIRGARILLVEDNDLNQQVATELLGDAGFQVDVADDGAIALAKVRRNAYDMVLMDMQMP 1333

Query: 657  LKDGIQATREIRQLPLPQAKILLFGCTADVFKDTRDKMLSAGADDIIAKPIAEHELDMAL 716
            + DG+ ATREIR+L      + +   TA+  +  RD+ L AG +D I KPI   +L  AL
Sbjct: 1334 VMDGVAATREIRRLG-QFDHLPIVAMTANAMQRDRDRCLDAGMNDFITKPIDPDQLWAAL 1392