Pairwise Alignments

Query, 736 a.a., histidine kinase from Vibrio cholerae E7946 ATCC 55056

Subject, 777 a.a., PAS domain S-box from Enterobacter asburiae PDN3

 Score =  213 bits (543), Expect = 2e-59
 Identities = 125/393 (31%), Positives = 218/393 (55%), Gaps = 5/393 (1%)

Query: 317 EIIDIRYKSQDEIRHLIDTFNQKTIYLEAEKVKAQASTKAKSAFLATLSHEIRTPMNGVL 376
           EI  + Y  +   RH +  F +     +  +   + +++ K+ F++T+SHE+RTP+NG++
Sbjct: 243 EIRKVPYYDRVGKRHGLMGFGRDITERKRYQDALERASRDKTTFISTISHELRTPLNGIV 302

Query: 377 GTAQILLKDELTSKQRQHLTSLYESGEHMMSLLNEILDYSKIEQGKFELDHSAFPLKSII 436
           G ++ILL  +LT++Q ++L +++ S   + ++ N+I+D  K+E+ K +LD+      S +
Sbjct: 303 GLSRILLDTDLTAEQEKYLKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFL 362

Query: 437 GSIKSIYSSLCVEKGLKFQLNSEITDGRWYYGDKARLRQIIFNLLSNAVKFTEAGFVAIG 496
             ++++      +KGL+F +   +        D  RLRQI++NL+SNAVKFT+ G VA+ 
Sbjct: 363 ADLENLSGLQAQQKGLRFIMEPTLPLPHKVVTDGTRLRQILWNLISNAVKFTQKGQVAVR 422

Query: 497 LSEESCDEENYLIIKVQDTGIGIAQESLGRIFRPFEQA-ESHTTRRFGGTGLGLAIVKQI 555
           +     DE + L  +V+D+G+GI QE   +IF  + Q  +S+  +   GTG+GLA+ K++
Sbjct: 423 I---RFDEGDMLHFEVEDSGMGIPQEEQDKIFAMYYQVKDSNGGKPATGTGIGLAVSKRL 479

Query: 556 AELMNGTVLVQSEVGQGSCFKVRVKLAITEPVTEDVKPTKAKTYPGLRVLIVEDNRTNIM 615
           A+ M G + V S+ G+GS F + V         ED         P L VL+VED   N++
Sbjct: 480 AKSMGGDITVASQPGKGSTFTLTVHAPAVAEEVEDTFENDDMPLPALHVLLVEDIELNVI 539

Query: 616 ILEAFMRNKGFECHSVMDGVQAITALQESSFDLVLMDNHMPLKDGIQATREIRQLPLPQA 675
           +  + +   G      M G  A+   +   +DLVL+D  +P   G+  +RE+ +      
Sbjct: 540 VARSVLEKLGNSVDVAMTGKAALEMFKPGEYDLVLLDIQLPDMTGLDISRELTRQYAADE 599

Query: 676 KILLFGCTADVFKDTRDKMLSAGADDIIAKPIA 708
              L   TA+V KD ++  L AG DD+++KP+A
Sbjct: 600 LPPLVALTANVLKDKKE-YLDAGMDDVLSKPLA 631