Pairwise Alignments

Query, 736 a.a., histidine kinase from Vibrio cholerae E7946 ATCC 55056

Subject, 1329 a.a., PAS domain S-box from Echinicola vietnamensis KMM 6221, DSM 17526

 Score =  228 bits (580), Expect = 2e-63
 Identities = 147/386 (38%), Positives = 215/386 (55%), Gaps = 26/386 (6%)

Query: 343  LEAEKVKAQASTKAKSAFLATLSHEIRTPMNGVLGTAQILLKDELTSKQRQHLTSLYESG 402
            L+  K+ A+ ++KAKS FLA +SHEIRTP+NGV+G   ++LK +L+  Q Q+L+ + +SG
Sbjct: 678  LKKAKILAEQASKAKSEFLANMSHEIRTPLNGVIGFTDLVLKTDLSETQAQYLSIVNQSG 737

Query: 403  EHMMSLLNEILDYSKIEQGKFELDHSAFPLKSIIGSIKSIYSSLCVEKGLKFQLNSEITD 462
              +++++N+ILD+SKIE GK ELD     L  +      I +    +KGL+  LN     
Sbjct: 738  NALLNIINDILDFSKIEAGKLELDIDRCDLYELTEQTSDIITYEVHKKGLEMLLNIHPDI 797

Query: 463  GRWYYGDKARLRQIIFNLLSNAVKFTEAGFVAIGL---SEESCDEENYLIIKVQDTGIGI 519
             R+ + D  R++QI+ NLL NA KFTE G + + L    ++    E  +   V+DTGIGI
Sbjct: 798  PRFIWVDSVRVKQIMVNLLGNASKFTEEGEIELQLYPIDKDEASREMVIRFSVRDTGIGI 857

Query: 520  AQESLGRIFRPFEQAESHTTRRFGGTGLGLAIVKQIAELMNGTVLVQSEVGQGSC--FKV 577
              E   +IF  F Q +  TT+++GGTGLGL I  ++ +LM+  + + S VG+GS   F +
Sbjct: 858  KAEKQTKIFEAFSQEDVSTTKKYGGTGLGLTISNRLLQLMHSGLQLHSTVGKGSTFYFDL 917

Query: 578  RVKLAITEPVT--EDVKPTKAKTYPGLRVLIVEDNRTNIMILEAFMRNKGFECHSVMDGV 635
             VK    E +T  ED+            VLIV+DN  N MI+E  M  +G       +G 
Sbjct: 918  NVKYEYGERITLEEDLSVE--------NVLIVDDNDNNRMIIERMMALRGISTSQAKNGF 969

Query: 636  QAITALQE-SSFDLVLMDNHMPLKDGIQATREIRQLPLPQAKILLFGCTADVFKDTRDKM 694
            +AI    E   FD+VLMD HMP  +GI+  R+IR++   Q  I L   + D      DK+
Sbjct: 970  EAIQKFVEGEKFDVVLMDYHMPYMNGIETIRKIREIVDRQPIIFLHSSSDD------DKI 1023

Query: 695  LSA----GADDIIAKPIAEHELDMAL 716
            L A    G    + KPI   E+  AL
Sbjct: 1024 LKACKELGVRKKLVKPIKLQEMYDAL 1049



 Score = 60.8 bits (146), Expect = 4e-13
 Identities = 36/118 (30%), Positives = 63/118 (53%), Gaps = 3/118 (2%)

Query: 603  RVLIVEDNRTNIMILEAFMRN--KGFECHSVMDGVQAITALQESSFDLVLMDNHMPLKDG 660
            +VLIVEDN  N+++ +  + N           +G +A+  +++    ++ MD  MP  +G
Sbjct: 1078 KVLIVEDNTINMLLAKTVIHNLSPATAILEAANGKEALEVMKDELPSVIFMDVQMPEMNG 1137

Query: 661  IQATREIRQLPLPQAKILLFGCTADVFKDTRDKMLSAGADDIIAKPIAEHELDMALEQ 718
             +AT+ IR+    +  IL+   TA   K  R+K + AG +D IAKP  E ++   +E+
Sbjct: 1138 YEATQAIRK-KYNKHNILIIALTAGNIKGEREKCMQAGMNDFIAKPFVEEDVIKLMEK 1194