Pairwise Alignments

Query, 736 a.a., histidine kinase from Vibrio cholerae E7946 ATCC 55056

Subject, 1172 a.a., PAS domain S-box from Echinicola vietnamensis KMM 6221, DSM 17526

 Score =  213 bits (542), Expect = 5e-59
 Identities = 131/372 (35%), Positives = 207/372 (55%), Gaps = 12/372 (3%)

Query: 350 AQASTKAKSAFLATLSHEIRTPMNGVLGTAQILLKDELTSKQRQHLTSLYESGEHMMSLL 409
           A+ + +AKS FLA +SHEIRTP+NG++G + ++LK EL  +Q Q+L+ + +S   +++++
Sbjct: 530 AEQANRAKSEFLANMSHEIRTPLNGIIGFSDLVLKTELNDRQEQYLSIVNQSANSLLNII 589

Query: 410 NEILDYSKIEQGKFELDHSAFPLKSIIGSIKSIYSSLCVEKGLKFQLNSEITDGRWYYGD 469
           N+ILD+SKIE GK +LD   + L  ++     I + +  +KGL+  LN      R+ + D
Sbjct: 590 NDILDFSKIEAGKLDLDIERYDLYELVEQASDIITYVIHQKGLEMLLNISPNIPRFAWID 649

Query: 470 KARLRQIIFNLLSNAVKFTEAGFVAIGLSEESCDEEN---YLIIKVQDTGIGIAQESLGR 526
             RL+Q++ NLL NA KFT+ G + + L+  S   +N    +   V+DTGIGI  E   +
Sbjct: 650 SVRLKQVLVNLLGNASKFTDKGEIELKLTPLSNSNKNGEMDIRFSVRDTGIGIKSEKQDK 709

Query: 527 IFRPFEQAESHTTRRFGGTGLGLAIVKQIAELMNGTVLVQSEVGQGSCFKVRVKLAITEP 586
           IF  F Q +  TT+++GGTGLGL I  ++ +LM   + + S   +GS F   +++     
Sbjct: 710 IFEAFSQEDVSTTKKYGGTGLGLTISNRLLQLMGSKLQLTSTPNRGSTFYFDLRIK---- 765

Query: 587 VTEDVKPTKAKTYPGL-RVLIVEDNRTNIMILEAFMRNKGFECHSVMDGVQAITALQE-S 644
             ED +    +  P L ++LIV+DN  N MI+E  +  KG +     +G +AI  L +  
Sbjct: 766 -CEDGQAIPLEGEPNLHKILIVDDNANNRMIIERMLALKGIQTVQAKNGYEAIQRLVDGE 824

Query: 645 SFDLVLMDNHMPLKDGIQATREIRQLPLPQAKILLFGCTADVFKDTRDKMLSAGADDIIA 704
            +D++LMD  MP  +GI   R+IR     Q  I L   + D       K LS      + 
Sbjct: 825 EYDVILMDFQMPYLNGIDTARKIRANFKEQPIIFLHSSSEDKTISLASKELS--IPHRLI 882

Query: 705 KPIAEHELDMAL 716
           KPI   ++  AL
Sbjct: 883 KPIKMQDMYDAL 894



 Score = 72.8 bits (177), Expect = 1e-16
 Identities = 44/133 (33%), Positives = 72/133 (54%), Gaps = 3/133 (2%)

Query: 604  VLIVEDNRTNIMILEAFMRNKGFECH--SVMDGVQAITALQESSFDLVLMDNHMPLKDGI 661
            +L VEDN  N+++ +  + N   +       +G QA+  L+ +  D++ MD  MP  +G 
Sbjct: 924  ILFVEDNAINMLLGKTVIHNISPKTTVLEASNGKQALELLKVNLPDMIFMDVQMPEMNGY 983

Query: 662  QATREIRQLPLPQAKILLFGCTADVFKDTRDKMLSAGADDIIAKPIAEHELDMALEQHSE 721
            +AT+ IR+       +L+F  TA   K  ++K + AG DD IAKP  E +L   LE+ S+
Sbjct: 984  EATKIIRK-EYKNKNLLIFALTAGNLKGEKEKCMEAGMDDFIAKPFVEEDLIRLLEKWSK 1042

Query: 722  RLYQFHREPSLPS 734
             + +    PS+PS
Sbjct: 1043 SIDKHKNAPSIPS 1055