Pairwise Alignments

Query, 736 a.a., histidine kinase from Vibrio cholerae E7946 ATCC 55056

Subject, 956 a.a., PAS domain S-box from Echinicola vietnamensis KMM 6221, DSM 17526

 Score =  244 bits (624), Expect = 1e-68
 Identities = 147/423 (34%), Positives = 245/423 (57%), Gaps = 20/423 (4%)

Query: 317 EIIDIRYKSQDEIRHLI---DTFNQKTIY--LEAEKVKAQASTKAKSAFLATLSHEIRTP 371
           + ++IR+   DE R +    D   QK     L+  K  A+ + +AKS FLA++SHEIRTP
Sbjct: 531 KFLEIRFFKLDEERMISVGRDVTEQKLWEKGLKEAKEVAEGANRAKSEFLASMSHEIRTP 590

Query: 372 MNGVLGTAQILLKDELTSKQRQHLTSLYESGEHMMSLLNEILDYSKIEQGKFELDHSAFP 431
           MNG+LG   +L   ++  +Q+  +  + +SGE ++ ++ +ILDYSKIE+GK EL+ S+  
Sbjct: 591 MNGLLGMIGLLEHTKMDDEQQSIVKVIKDSGESLLVIIKDILDYSKIEEGKLELELSSSK 650

Query: 432 LKSIIGSIKSIYSSLCVEKGLKFQLNSEITDGRWYYGDKARLRQIIFNLLSNAVKFT-EA 490
            +  +  + +I+S + V K L   L+   T  +W   D  +L QI+FN++ NAVKFT + 
Sbjct: 651 FREELNKVINIFSGMVVGKELSLNLDIAPTIPQWLILDNEKLSQILFNIIGNAVKFTPKG 710

Query: 491 GFVAIGLSEESCDEENYLI-IKVQDTGIGIAQESLGRIFRPFEQAESHTTRRFGGTGLGL 549
           G V+I +S E   ++N+++   V+DTG+GI +  + ++  PF Q    T     G+GLGL
Sbjct: 711 GDVSIKVSGEPILDKNFMLYFNVKDTGVGIPKSKIDQLINPFTQTGRGTAEEKSGSGLGL 770

Query: 550 AIVKQIAELMNGTVLVQSEVGQGSCFKVRVKLAIT---EPVTEDVKPTKAKTYPGL---- 602
           AI  ++ ELM G++ ++SEVG+GS F   V   I+   E V +D     AK    L    
Sbjct: 771 AIANKLIELMGGSLQIESEVGKGSEFSFTVFARISDSEEKVGKDDYEKYAKEEYKLSHIS 830

Query: 603 -----RVLIVEDNRTNIMILEAFMRNKGFECHSVMDGVQAITALQESSFDLVLMDNHMPL 657
                 +L+ EDN  N+  ++  M+  G+   +V  G +A+ A+Q+  +D++ MD  MP+
Sbjct: 831 DKFPKEILLAEDNDINLKFMKLLMKQLGYSVDTVSTGEEAVKAVQKKRYDMIFMDYQMPV 890

Query: 658 KDGIQATREIRQLPLPQAKILLFGCTADVFKDTRDKMLSAGADDIIAKPIAEHELDMALE 717
            DG++A+REI+++      I + G +A+VFK+  ++   AG DD + KPI   ++ M ++
Sbjct: 891 MDGLEASREIKKMK-EGKYIRIIGLSANVFKEDIERAYEAGMDDYLTKPIKIQDVVMKIK 949

Query: 718 QHS 720
           + S
Sbjct: 950 ESS 952