Pairwise Alignments

Query, 279 a.a., AraC family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 282 a.a., L-rhamnose operon transcriptional activator RhaR from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score = 69.7 bits (169), Expect = 7e-17
 Identities = 57/244 (23%), Positives = 107/244 (43%), Gaps = 11/244 (4%)

Query: 38  FPRLELVLGGEYINEMESHDRKVTKIIAKAGDAIFIPANCWNKPNWDTDCSVLSMLFGRR 97
           F  L +V  G  ++ +     ++T+     GD  +I A   +      D  + ++++   
Sbjct: 38  FCELVMVWRGNGLHVLNERPYRITR-----GDLFYIRAEDKHSYTSVNDLVLQNIIYCPE 92

Query: 98  QLGLSFVSKRKGEANFYDIQKHSIQTRSGFAIDNILEALSSLARE-NYKKP----MDELL 152
           +L L+ V+ +     F   Q H         ++   + ++ L  E N + P    M ELL
Sbjct: 93  RLKLN-VNWQAMIPGFQGAQWHPHWRLGSMGMNQARQVINQLEHESNGRDPLANEMAELL 151

Query: 153 LQALLQYTQTMLNAPTEQPQNRVQDLYQGICIYIQENFHRPITRESIASRFSISANHLSR 212
              L+   +    A  + P    + L   +   +  +   P   ++   +   S   L +
Sbjct: 152 FGQLVMTLKRHRYATDDLPATSRETLLDKLITALANSLECPFALDAFCQQEQCSERVLRQ 211

Query: 213 LFRQQGHMTLADYITWVRVDRAKFMLKKYNFKLNEVSLRCGFKDVNYFCRVFKNRTGRTP 272
            FR Q  MT+  Y+  VR+  A+++L+     ++E+S++CGF+D NYF  VF   TG TP
Sbjct: 212 QFRAQTGMTINQYLRQVRICHAQYLLQHSPLMISEISMQCGFEDSNYFSVVFTRETGMTP 271

Query: 273 TDYR 276
           + +R
Sbjct: 272 SQWR 275