Pairwise Alignments

Query, 279 a.a., AraC family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 285 a.a., predicted DNA-binding protein (NCBI) from Escherichia coli BW25113

 Score =  182 bits (463), Expect = 6e-51
 Identities = 103/277 (37%), Positives = 163/277 (58%), Gaps = 10/277 (3%)

Query: 3   FDDLISSVLNERESFHHIWFAGDFHTPPEFSYQVNFPRLELVLGGEYINEMESHDRKVTK 62
           F DL S ++   +    +WFA    + P  S  ++FPRL++VL GEY N +E+  +++ +
Sbjct: 13  FADLFSGLVLNPQLLGRVWFASQPASLPVGSLCIDFPRLDIVLRGEYGNLLEAKQQRLVE 72

Query: 63  IIAKAGDAIFIPANCWNKPNWDTDCSVLSMLFGRRQLGLSFVSKRKGEANF--YDIQKHS 120
                G+ +FIPA   N P  +    +LS++F    LGLSF   R          IQ  S
Sbjct: 73  -----GEMLFIPARAANLPVNNKPVMLLSLVFAPTWLGLSFYDSRTTSLLHPARQIQLPS 127

Query: 121 IQTRSGFAIDNILEALSSLARENYKKPMDELLLQALLQYTQTMLNAPTEQPQNRVQDLYQ 180
           +Q   G A+   L AL+ L+R   ++ + + L+ +LL   ++++N P    Q R   LY 
Sbjct: 128 LQRGEGEAM---LTALTHLSRSPLEQNIIQPLVLSLLHLCRSVVNMPPGNSQPRGDFLYH 184

Query: 181 GICIYIQENFHRPITRESIASRFSISANHLSRLFRQQGHMTLADYITWVRVDRAKFMLKK 240
            IC ++Q+N+ +P+TRES+A  F+I+ NHLS+LF Q G M   +Y+ WVR+ +A+ +L+K
Sbjct: 185 SICNWVQDNYAQPLTRESVAQFFNITPNHLSKLFAQHGTMRFIEYVRWVRMAKARMILQK 244

Query: 241 YNFKLNEVSLRCGFKDVNYFCRVFKNRTGRTPTDYRA 277
           Y+  ++EV+ RCGF D +YFCRVF+ + G TP +Y A
Sbjct: 245 YHLSIHEVAQRCGFPDSDYFCRVFRRQFGLTPGEYSA 281