Pairwise Alignments

Query, 621 a.a., PTS fructose transporter subunit IIA from Vibrio cholerae E7946 ATCC 55056

Subject, 569 a.a., FruA from Pseudomonas simiae WCS417

 Score =  239 bits (609), Expect = 3e-67
 Identities = 143/329 (43%), Positives = 198/329 (60%), Gaps = 8/329 (2%)

Query: 178 VKEHLLFGTSHMMPFIVAGGVLLSLSVMMSGHGAVPEEGVLAD-IAQMGIAGLTLFTVVL 236
           V +HLL G S M+P +VAGG+L++LS M  G  A  E+G LA  +  +G     L   +L
Sbjct: 231 VYKHLLTGVSFMLPMVVAGGLLIALSFMF-GITAFEEKGTLAAALKTVGDQAFMLMVPLL 289

Query: 237 GGYIAYSMADKPGLAPGMIGTWIAINQYQTGFIGAIIVGFFAGFVVRQLKR-IALPDSMS 295
            GYIAYS+AD+P LAPGMIG  +A      GFIG I  GF AG+ V+ + R + LP S+ 
Sbjct: 290 AGYIAYSIADRPALAPGMIGGLLATT-LGAGFIGGIFAGFLAGYCVKLITRAVQLPQSLD 348

Query: 296 SLGSIFIYPLVGTFVTCGAVMWLIGAPIASSMLWLNQFLASMADSGKVVLGAVLGAMTAF 355
           +L  I I PL+ +  T  A+++L+G P+A  ++ L +FL +M  +  V+LG +LG M   
Sbjct: 349 ALKPILIIPLLASLFTGLAMIYLVGPPVARMLVGLTEFLNTMGTTNAVLLGILLGGMMCV 408

Query: 356 DMGGPINKVATLFAQTQVNTQPWL-MGGVGIAICTPPLGMALATLLSPSKFKRDEREAGK 414
           D+GGPINK A  F+   +       +     A   PP+GM +AT L+  KF + EREAGK
Sbjct: 409 DLGGPINKAAYAFSVGMLAAHSGAPIAATMAAGMVPPIGMGIATFLARRKFAQTEREAGK 468

Query: 415 AAGIMGMIGISEGAIPFAAADPARVLPAIIAGGIVGNVIGFLFQVLNHAPWGGWIVLPV- 473
           AA I+GM+ ISEGAIPFAA DP RV+PA IAGG +   +   F     AP GG  VL + 
Sbjct: 469 AAIILGMVFISEGAIPFAAKDPLRVIPASIAGGALAGALSMYFGCKLAAPHGGLAVLVIP 528

Query: 474 --VDGKLGYILGTIAGALATALIAIALKK 500
             ++  L Y+L  +AG+L T L+   +K+
Sbjct: 529 NAMNHALLYLLAIVAGSLLTGLVYALIKR 557



 Score = 64.7 bits (156), Expect = 1e-14
 Identities = 42/131 (32%), Positives = 70/131 (53%), Gaps = 7/131 (5%)

Query: 490 ATALIAIALKKTVHEQDNEQGQSLAFSSVIGEGQADILAVTSCPSGVAHTFLAAKSLEKA 549
           +T   A+A    V  +  E+ Q    +    E    I+A+T+CP+GVAHTF+AA++L++ 
Sbjct: 80  STPAQALADVDAVLRRGAEEAQVYVATQQAAENAPRIVAITACPTGVAHTFMAAEALQQT 139

Query: 550 ACLAGVKIKVETQGANGIINRITAKDVQRAKLVIFAHDVAIKEPERFKHIKV------ID 603
           A   G  ++VETQG+ G    ++ + +  A +V+ A D+ +   ERF   K+      I 
Sbjct: 140 AKRLGYDLQVETQGSVGARTPLSPQAIAEADVVLLAADIEV-ATERFAGKKIYRCGTGIA 198

Query: 604 VTTKDAILNAA 614
           +   +A LN A
Sbjct: 199 LKQSEATLNKA 209



 Score = 32.0 bits (71), Expect = 7e-05
 Identities = 21/90 (23%), Positives = 42/90 (46%), Gaps = 1/90 (1%)

Query: 529 VTSCPSGVAHTFLAAKSLEKAACLAGVKIKVETQGANGIINRITAKDVQRAKLVIFAHDV 588
           VT+CP+G+  + L A+ L+ AA   G    VE         +++   +  A+ V+     
Sbjct: 6   VTACPNGMVTSVLCARLLDAAAQRQGWSTSVEVVDVQRPERQLSQATIDDAEWVLLVSST 65

Query: 589 AIKEPERFKHIKVIDVTTKDAILNAAALVQ 618
            + + +RF   +V   T   A+ +  A+++
Sbjct: 66  PV-DMQRFVGKRVFQSTPAQALADVDAVLR 94