Pairwise Alignments

Query, 587 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 480 a.a., DNA-binding transcriptional regulator NtrC from Xanthobacter sp. DMC5

 Score =  186 bits (471), Expect = 2e-51
 Identities = 116/326 (35%), Positives = 183/326 (56%), Gaps = 45/326 (13%)

Query: 297 RVIDKDIRLLILGQTGVGKNEFVKALHKNSQRKNGPLVAVNCGALAKELVEAELFGYVAG 356
           R++  D+ ++I G++G GK    +ALH   +R+ GP VA+N  A+ ++L+E+ELFG+  G
Sbjct: 156 RLMQTDLTVMIAGESGTGKELVARALHDYGKRRTGPFVAINMAAIPRDLIESELFGHEKG 215

Query: 357 AFTGASHKGYQGKVRLADKGILFLDEIADLPLDAQSRLLHVLQDKTVLPVGSNHATKVDI 416
           +FTGA+ +   G+   A+ G LFLDEI D+P++AQ+RLL VLQ      VG     K D+
Sbjct: 216 SFTGATTRN-PGRFEQAEGGTLFLDEIGDMPMEAQTRLLRVLQQGEYTTVGGRTPIKTDV 274

Query: 417 QIIAATHKNLEQLVTQGLFRQDLYYRLSDLVVELPSFQQR-QDRQALIHHIHRRYSDAG- 474
           +IIAAT+K+L  L+ QGLFR+DL++RL+ + + LP  ++R +D   L+ H   +    G 
Sbjct: 275 RIIAATNKDLRTLIQQGLFREDLFFRLNVVPLRLPPLRERSEDVPDLVRHFFLQAEREGL 334

Query: 475 --QQICGDLMQRLLAYHWPGNLRELDSLIKVASLMAEGEGVLTFNHLPTHLAQKLSHAAP 532
             +QI    + RL  Y WPGN+REL++L++  + +   E V+T    P  +  +LS   P
Sbjct: 335 PAKQIDSAALDRLKRYRWPGNVRELENLVRRLAALYPQE-VIT----PAIIEAELSEPMP 389

Query: 533 TATEDDQQKDIKSTVEASL---LKTY------------------------------QATQ 559
               ++   D  +T+ AS+   L TY                               AT+
Sbjct: 390 NMLSEEGPVD--ATLAASVERHLNTYFSGFGENLPPPGLYHRILKDVEYPLLSAALAATR 447

Query: 560 GNISQTSRLLGLSRNTIYRKLKALGI 585
           GN  + + LLGL+RNT+ +K++ L I
Sbjct: 448 GNQIKAAELLGLNRNTLRKKIRDLDI 473