Pairwise Alignments

Query, 587 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 634 a.a., Acetoin dehydrogenase operon transcriptional activator AcoR from Xanthobacter sp. DMC5

 Score =  254 bits (650), Expect = 6e-72
 Identities = 189/611 (30%), Positives = 310/611 (50%), Gaps = 53/611 (8%)

Query: 16  SWQRSEQAGLTQQSRAQDIRLSDNKLKERRQELAGLIDTVSRFALPLFYQLFAHSDSRLI 75
           SWQRS +  L    RA    +S+ +L  RR +   L+ T +R A+     L + + S LI
Sbjct: 30  SWQRS-RLHLIAADRAAAPLVSEAELFRRRHQNNRLV-TAARPAMEEARHLLSDAHSMLI 87

Query: 76  LTDQHGVIIGSWGQARFREKLSQIALSSGACWQEPIKGTNAIGTALIEQKPISVIGEQHF 135
           L+D  G I+ + G AR  +   ++ L  G  W E   GTNAIGTAL   +P+ +   +HF
Sbjct: 88  LSDPDGTILEAEGDARALDTGQEVKLQQGGLWCEAEIGTNAIGTALACGRPVQIHAAEHF 147

Query: 136 IQHHHFISCSASPI-FDYTGQLIGVLDI---TSEQQKHTLSTQVVVQNMVQLVENQLLNQ 191
                  +C+A+P+      ++IG +DI   T       L+  V + + ++ V  + +  
Sbjct: 148 CAPVQRWTCAAAPVRHPLDREIIGAVDISGSTDTFNPQNLAHAVALAHQIEAVLGRRMEM 207

Query: 192 -----IPHGHVRIDLACEPSLLSSGWQGVIIADESGQILAHNQVAGQLLAQGRVI----- 241
                + H   +  L     +L+ G  G +I      +    + + +L++ GR+      
Sbjct: 208 EHEQVLRHFLSKRSLWLTEEILAFGRSGALIYSTDRALKEAARRSDRLISDGRLTALKDV 267

Query: 242 --------------GQSVEQVLPRPQT-------HASFIYTTTPLHSKQHRT-RALTP-A 278
                         G SVE V    +        HA+      P  + Q    R L P A
Sbjct: 268 TPDAWAARIAQLLPGASVEIVREEGEEIGGVVVLHAARRPKPAPRDTSQRDPGRELEPLA 327

Query: 279 SDLHFGDAEV-ERCWQQANRVIDKDIRLLILGQTGVGKNEFVKALHKNSQRKNGPLVAVN 337
            D   G++ + +    +A R+ +  + +L+ G+TGVGK  F +A+H  ++   GP V +N
Sbjct: 328 FDAIIGESAIMQEVKAKARRMAESGLPILLEGETGVGKEVFARAIH-GARAPAGPFVPLN 386

Query: 338 CGALAKELVEAELFGYVAGAFTGASHKGYQGKVRLADKGILFLDEIADLPLDAQSRLLHV 397
           CG L ++L+ +ELFGY  GAFTGA   G QGKV  AD G+L LDEI ++PL+ QS LL V
Sbjct: 387 CGGLPRDLIASELFGYEKGAFTGADTSGKQGKVEAADGGLLCLDEIGEMPLELQSYLLRV 446

Query: 398 LQDKTVLPVGSNHATKVDIQIIAATHKNLEQLVTQGLFRQDLYYRLSDLVVELPSFQQR- 456
           L+D  V  VG +   +VD+++++ T+++L   V  G FR+DL+YR++ L + +P  ++R 
Sbjct: 447 LEDGVVYRVGGHTGRRVDLRLVSMTNRDLTGEVAAGRFRKDLFYRIAALRLRIPPLRERG 506

Query: 457 QDRQALIHHIHR----RYSDAGQQICGDLMQRLLAYHWPGNLRELDSLIKVASLMAEGEG 512
           +D   L+ HI R    R      +        L AY WPGN+REL +++++   M   + 
Sbjct: 507 EDVLLLLDHIGRSAAARAGLPAPRFTEAARAALAAYSWPGNVRELRNVVEMLIAMGSADA 566

Query: 513 VLTFNHLPTHLAQKLSHAAPTATEDDQQKDIKSTVEASLLKTYQATQGNISQTSRLLGLS 572
            +  + LP  +A   + AAP AT      D+++  EA++    +A  GN+++ +R LG++
Sbjct: 567 PIDGSDLPPEIATAAA-AAPAAT------DLRTVEEAAIRAAVEACGGNLTRAARRLGIA 619

Query: 573 RNTIYRKLKAL 583
           R+T+Y +L AL
Sbjct: 620 RSTLYMRLAAL 630