Pairwise Alignments

Query, 587 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 632 a.a., Fis family transcriptional regulator from Pseudomonas simiae WCS417

 Score =  300 bits (768), Expect = 1e-85
 Identities = 211/616 (34%), Positives = 331/616 (53%), Gaps = 56/616 (9%)

Query: 13  LVNSWQRS-EQAGLTQQSRAQDIRLSDNKLKERRQELAGLIDTVSRFALPLFYQLFAHSD 71
           +  SW R  E   L          L   +L E R+ L  ++  ++   +   +Q  + + 
Sbjct: 28  IARSWLRCLEDYHLDPAQTIAPTVLEHGRLLESRERLQQVLH-IAGSEMNSLHQQLSGAG 86

Query: 72  SRLILTDQHGVIIGSWGQARFREKLSQIALSSGACWQEPIKGTNAIGTALIEQKPISVIG 131
             ++LTD  GVI+        R+   +  L  GA W E  +GTN IGT L+E++ +++  
Sbjct: 87  HAVLLTDARGVILNCVTAPSERKIFERAGLWLGADWSEACEGTNGIGTCLVERQSLTIHR 146

Query: 132 EQHFIQHHHFISCSASPIFDYTGQLIGVLDITSEQQKHTLSTQVVVQNMVQLVENQL--- 188
           ++HF   H  ++CSASP+FD  G L+ VLD++S ++  +  +Q     +V L    +   
Sbjct: 147 DEHFRGRHTGLTCSASPVFDPQGDLLAVLDVSSAREAVSRQSQFHTMALVNLSAKMIESC 206

Query: 189 --LNQIPHGHV-RIDLACEPSLLSSGWQGVIIADESGQILAHNQVAGQLLAQ--GRVIGQ 243
             L    H  + R  L  E   L S  +G++  D  G+I A NQ A  LL Q  G ++G 
Sbjct: 207 YFLRHFEHHWLLRFHLQAESVGLFS--EGLLAFDGDGRICAVNQSALNLLGQVRGGLLGH 264

Query: 244 SVE--------QVLPRPQTHASFIYTTTPLHSKQHRT--RAL----------------TP 277
            VE        Q+L R   +A+    + PL ++  R    AL                 P
Sbjct: 265 PVEAFFDCSLDQLLGRASANAT---ASWPLRTRDGRQLFAALRGQVRSASTPFVKPEPAP 321

Query: 278 ASDLHFGDAEVERCWQQANRVIDKDIRLLILGQTGVGKNEFVKALHKNSQRKNGPLVAVN 337
              +  GD  +++ +++A RV ++D+ LLI G+TG GK  F KA+H  SQR +   VA+N
Sbjct: 322 LPGICLGDPTLQQDFRKALRVFERDVPLLINGETGSGKEAFAKAVHLASQRADKAFVALN 381

Query: 338 CGALAKELVEAELFGYVAGAFTGASHKGYQGKVRLADKGILFLDEIADLPLDAQSRLLHV 397
           C A+ + L+E+ELFGY  G+FTGA  +G QGK++ AD G LFLDEI D+PL  Q+RLL V
Sbjct: 382 CAAIPESLIESELFGYRGGSFTGARKEGMQGKLQQADGGTLFLDEIGDMPLALQTRLLRV 441

Query: 398 LQDKTVLPVGSNHATKVDIQIIAATHKNLEQLVTQGLFRQDLYYRLSDLVVELPSFQQRQ 457
           L+D+ V+P+G      V+++II+ATH+NL + V  G FR+DLYYRL+ L V LP  ++R 
Sbjct: 442 LEDRLVVPLG-GEPQAVNVRIISATHRNLLERVQDGSFREDLYYRLNGLEVGLPPLRERS 500

Query: 458 DRQALIHHIHRRYSDAGQQICGDLMQR--LLAYHWPGNLRELDSLIKVASLMAEGEGVLT 515
           D+  L+  +  + ++ G+ +  D   R  LLA+ WPGN+R+L ++++    + + EG + 
Sbjct: 501 DKAQLLDFLLTQEAN-GEPVALDPSARGALLAFAWPGNVRQLRTVLRTLVALCD-EGRVG 558

Query: 516 FNHLPTHLAQKLSHAAPTATEDDQQKDIKSTVE----ASLLKTYQATQGNISQTSRLLGL 571
              LP  + Q    A P A    Q K ++S +E     +LL   Q  + +++ T+  LG+
Sbjct: 559 LEDLPAQIRQ----ARPVAVA--QTKPLESPLEDAERLALLTALQQQRWHMTHTAEQLGV 612

Query: 572 SRNTIYRKLKALGILK 587
           SRNT+YRKL+  GI +
Sbjct: 613 SRNTLYRKLRRHGIAR 628