Pairwise Alignments

Query, 587 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 621 a.a., Fis family transcriptional regulator from Pseudomonas simiae WCS417

 Score =  281 bits (718), Expect = 7e-80
 Identities = 198/601 (32%), Positives = 304/601 (50%), Gaps = 27/601 (4%)

Query: 3   QLQQLSHVNWLVNSWQRSEQAGLTQQSRAQDIRLSDNKLKERRQELAGLIDTVSRFALPL 62
           +L Q    + + +SW+RS +         Q  R+    L    +E A L   ++   +  
Sbjct: 22  RLPQAPVPSLIFDSWRRSMEQHHLDPGSLQGPRILSEPLLRECRERADLFMRIASEEVGQ 81

Query: 63  FYQLFAHSDSRLILTDQHGVIIGSWGQARFREKLSQIALSSGACWQEPIKGTNAIGTALI 122
            +    H+D  ++LTD  G  I        R    +  L  G CW E  +GT  + T L 
Sbjct: 82  LHHRVRHADYCVMLTDAQGQTIDHRVDTSIRNDCRKAGLYLGTCWSEAEEGTCGVATVLT 141

Query: 123 EQKPISVIGEQHFIQHHHFISCSASPIFDYTGQLIGVLDITSEQQKHTLSTQVVVQNMV- 181
            Q  ++V    HF      ++CSA+PIFD  G L+GV+D ++ +      +Q +V+ MV 
Sbjct: 142 SQSAVTVHKRDHFRAAFIGLTCSAAPIFDPQGNLLGVMDASALKSPDDRRSQHLVRQMVA 201

Query: 182 ---QLVENQLLNQIPHGHVRIDLACEPSLLSSGWQGVIIADESGQILAHNQVAGQLLAQ- 237
              Q +EN         H  +     P  + S    ++  D+ G++ A N  A Q L + 
Sbjct: 202 QSAQAIENAFFMHSARQHWVLQAHSTPGYVDSQPDLLLAWDQDGRLHALNSKARQALRRR 261

Query: 238 -GRV---IGQSVEQVLPRPQTHAS-----FIYTTTPLHSKQHRTRALTP-ASDLHFGDAE 287
            G+V   IG   +    R  TH +     ++     LH + +  R     A+ +   DA 
Sbjct: 262 FGQVPEHIGDVFDLDALRAVTHDATQQLPWLGEPGVLHVRVNAPRRKPARAAVIPLVDAR 321

Query: 288 VERCWQQANRVIDKDIRLLILGQTGVGKNEFVKALHKNSQRKNGPLVAVNCGALAKELVE 347
           VE   + A RV ++++ +L+ G+TG GK  F + LH+ S R  GP VAVNC A+ + L+E
Sbjct: 322 VEEHLRLALRVKNRNLPVLVQGETGAGKEVFARQLHERSARHTGPFVAVNCAAIPENLIE 381

Query: 348 AELFGYVAGAFTGASHKGYQGKVRLADKGILFLDEIADLPLDAQSRLLHVLQDKTVLPVG 407
           +ELFGYVAGAFTGAS KG  G +  AD G LFLDEI D+PL  Q+RLL V+ +  V P+G
Sbjct: 382 SELFGYVAGAFTGASSKGMPGLLVQADGGTLFLDEIGDMPLALQTRLLRVMAEGEVAPLG 441

Query: 408 SNHATKVDIQIIAATHKNLEQLVTQGLFRQDLYYRLSDLVVELPSFQQRQDRQALIHHI- 466
           +     VDI +I A+H++L  LV++G FR+DL++RL      LP  ++R D+ ALI+ + 
Sbjct: 442 AAKTRAVDIHVICASHRDLSVLVSEGRFREDLFFRLGCARFCLPPLRERTDKLALINRLL 501

Query: 467 --HRRYSDAGQQICGDLMQRLLAYHWPGNLRELDSLIKVASLMAEGEGVLTFNHLPTHLA 524
               R S     I    +Q LL Y WPGN+R+L  ++  A  + EG G +    LP  + 
Sbjct: 502 EQEARNSRVSVGIAPSALQLLLGYAWPGNVRQLRHVLAYACAVCEG-GTVQVADLPVEVR 560

Query: 525 QKLSHAAPTATEDDQQKDIKSTVEASLLKTYQATQGNISQTSRLLGLSRNTIYRKLKALG 584
            +   AAP  TED    + +  ++A +   ++        T++ LG+SR T+YR++  LG
Sbjct: 561 GE-QVAAP--TEDRASPERQVVLDALIRHRWKPL-----PTAQALGISRATLYRRVNQLG 612

Query: 585 I 585
           I
Sbjct: 613 I 613