Pairwise Alignments

Query, 587 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 654 a.a., ATPase AAA from Pseudomonas simiae WCS417

 Score =  239 bits (610), Expect = 3e-67
 Identities = 197/632 (31%), Positives = 308/632 (48%), Gaps = 75/632 (11%)

Query: 3   QLQQLSHVNWLV-NSWQRSEQAGLTQQSRAQDIRLSDNKLKERRQELAGLIDTVSRFALP 61
           Q+++ +HV  ++  SW+RS +AG+     A     +D  L   + +   LI   ++    
Sbjct: 40  QVERPAHVRQVIWASWRRSVEAGIDPADNAYRFVAADT-LAATQADHRVLIAAAAQ---- 94

Query: 62  LFYQLFAHSD-SRLILTDQHGVIIGSWGQARFREKLSQIALSSGACWQEPIKGTNAIGTA 120
           + + L A++    + LTD  G  +   G               G+   E ++GTN  G A
Sbjct: 95  VMHGLLAYNPRGHINLTDADGTTLYFCGLD---------ITPVGSRLLESVQGTNCTGLA 145

Query: 121 LIEQKPISVIGEQHFI--QHHHFISCSASPIFDYTGQLIGVLDITSEQQKHTLSTQVVVQ 178
           L E   + V+ E++F        + C+A+PI +  GQ + +L +T+E       T   VQ
Sbjct: 146 LAEDHLVYVLAEENFGIGLRQRRMHCAAAPIKNTQGQTVAMLTLTAEPGWFHFHTLGTVQ 205

Query: 179 NMVQLVENQLLNQIPHGHVRIDLACEPSLLSSGWQGVIIADESGQILAHNQVAGQLLAQG 238
              + V  Q+     HG     L  + ++L    +G+++ DE G I A N+ A QL   G
Sbjct: 206 AAAEAVSRQMAL---HGL----LEEQQTVLEVLNEGLVVLDERGCIKALNRYARQLFGVG 258

Query: 239 -RVIGQSVEQVLPRPQTHASF---------------------IYTTTPLHS--------K 268
             +IG+  +Q L R +   S                      + +  PL          +
Sbjct: 259 LELIGRPFQQ-LGRSELSDSMGEAVRDRDCTFHLHNRSQLACLVSVCPLEQGGVIVSLRE 317

Query: 269 QHRTRALTP---------ASDLHFGDAEVERCWQQANRVIDK-DIRLLILGQTGVGKNEF 318
             R R +T            D   G +   +      R+  + D   LILG++G GK  F
Sbjct: 318 NRRIREITRRIIGTQASYTFDTIQGSSRAIQDALHLGRIASRSDSTTLILGESGTGKELF 377

Query: 319 VKALHKNSQRKNGPLVAVNCGALAKELVEAELFGYVAGAFTGASHKGYQGKVRLADKGIL 378
            +A+H  S R NGP VAVNCGA+ ++LV++ELFG+V GAFTG++  G  GK  LAD G +
Sbjct: 378 AQAIHNGSDRCNGPFVAVNCGAIPRDLVQSELFGHVEGAFTGSARGGSAGKFELADGGTI 437

Query: 379 FLDEIADLPLDAQSRLLHVLQDKTVLPVGSNHATKVDIQIIAATHKNLEQLVTQGLFRQD 438
           FLDEI D+  DAQ  LL VLQ+  +  VG+ ++ +VD++IIAATH+NL Q V QG FR+D
Sbjct: 438 FLDEIGDMSFDAQVSLLRVLQEGEITRVGAKNSRQVDVRIIAATHRNLSQAVAQGAFRED 497

Query: 439 LYYRLSDLVVELPSFQQRQDRQALI--HHIHRRYSDAGQQICG---DLMQRLLAYHWPGN 493
           LYYRL+ L + +P  + R++   L+  H + R      + + G   + M  L AY WPGN
Sbjct: 498 LYYRLNVLNLTVPPLRMRREDIPLLARHFLARCARSLRKSVQGFSPEAMALLSAYGWPGN 557

Query: 494 LRELDSLIKVASLMAEGEGVLTFNHLPTHLAQKLSHAAPTATEDDQQKDIKSTVEASLLK 553
           +REL++ I+ A+ +A G  ++    LP    Q+   A   A E    +D+ S    +++ 
Sbjct: 558 VRELENSIERATNLAMG-ALIEPVDLPLENRQR---APLRAYEPQAAQDLSSHERHAIVA 613

Query: 554 TYQATQGNISQTSRLLGLSRNTIYRKLKALGI 585
               T GNI   +R L +SR  +Y K+   G+
Sbjct: 614 ALTNTGGNIRLAARQLNVSRGGLYNKMSRFGL 645