Pairwise Alignments

Query, 587 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 465 a.a., Fis family transcriptional regulator from Pseudomonas simiae WCS417

 Score =  189 bits (480), Expect = 2e-52
 Identities = 116/306 (37%), Positives = 178/306 (58%), Gaps = 15/306 (4%)

Query: 293 QQANRVIDKDIRLLILGQTGVGKNEFVKALHKNSQRKNGPLVAVNCGALAKELVEAELFG 352
           Q  + V D    +L+ G++G GK    +A+HK+  R + P VAVNC A+ + L+E+E+FG
Sbjct: 155 QAVDSVRDSSATILLTGESGTGKEMVARAIHKHGSRADKPFVAVNCAAIPEGLLESEMFG 214

Query: 353 YVAGAFTGASHKGYQGKVRLADKGILFLDEIADLPLDAQSRLLHVLQDKTVLPVGSNHAT 412
           +  GAFTGA      G+ + ADKG LFLDE+ D+PL  Q+++L  LQ++ + PVG     
Sbjct: 215 HRKGAFTGAVADRV-GRFQQADKGTLFLDEVGDMPLALQAKILRALQERVIEPVGDPRER 273

Query: 413 KVDIQIIAATHKNLEQLVTQGLFRQDLYYRLSDLVVELPSFQQR-QDRQALIHHIHRRYS 471
           KVD+++IAAT+KNL   V    FR+DLYYRL+   + LPS ++R +D   L  H  +  S
Sbjct: 274 KVDVRVIAATNKNLLDAVANKEFREDLYYRLNVFPIPLPSLRERVEDIAPLARHFAQTLS 333

Query: 472 -DAGQQICG---DLMQRLLAYHWPGNLRELDSLIKVASLMAEGEGVLTFNHLPTHL-AQK 526
             AG++I G   + +Q + AYHWPGN+REL + ++ A+++A    V+    LP +L A K
Sbjct: 334 ATAGKRITGFSAEALQAMAAYHWPGNIRELQNCVERATIVA-ASPVIEDIDLPGYLFASK 392

Query: 527 LSHAAPTATEDD-----QQKD--IKSTVEASLLKTYQATQGNISQTSRLLGLSRNTIYRK 579
            +    TA   D     Q  D  +    +A +L   Q + G  +  +  +G+S  + + +
Sbjct: 393 PNQGDVTAILSDGPGIPQDLDAALAEVEKAYILAALQESNGVQAAAAAKIGISERSFWYR 452

Query: 580 LKALGI 585
           LK LGI
Sbjct: 453 LKKLGI 458