Pairwise Alignments

Query, 587 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 631 a.a., no description from Variovorax sp. SCN45

 Score =  297 bits (760), Expect = 1e-84
 Identities = 204/600 (34%), Positives = 316/600 (52%), Gaps = 49/600 (8%)

Query: 16  SWQRSEQAGLTQQSRAQDIRLSDNKLKERRQELAGLIDTVSRFALPLFYQLFAHSDSR-- 73
           SWQRS               ++   L+ERR++   L+D     A P    L  H+     
Sbjct: 36  SWQRSRPV---DHQYIDPAPMALALLRERREQSMRLLDC----AQPELDGLAEHAIGNGC 88

Query: 74  -LILTDQHGVIIGSWGQARFREKLSQIALSSGACWQEPIKGTNAIGTALIEQKPISVIGE 132
            +IL+D  G+I+   G   F  K  +IAL  G  W E  +GTNAIGTAL E++ + V+G 
Sbjct: 89  VVILSDASGLILEEIGSPDFLPKAERIALQPGVEWSENNRGTNAIGTALAEREALMVLGG 148

Query: 133 QHFIQHHHFISCSASPIFDYTGQLIGVLDITSEQQKHTLSTQVVVQNMVQLVENQLLNQI 192
           +H++  +  + C+A+PIF   G+L G LDI+ E  +       +V+   Q VE+++L   
Sbjct: 149 EHYLAQNGALGCAAAPIFTGRGELAGALDISGETVRVNTHALGLVRMAAQQVEHRMLLAE 208

Query: 193 PHGHVRIDLACEPSLLSSGWQGVIIADESGQILAHNQVAGQLLAQG--RVIGQSVEQVL- 249
             GHV +     P+L+ +  +G+++  E G+I+A N+VA +L  +    ++       L 
Sbjct: 209 AQGHV-LRFHARPALIGTAREGLMVI-EGGRIVAANRVALELFGRSWDGLLDLEARDFLG 266

Query: 250 ---PRPQTHASFIY-------------TTTPLHSKQHRTRALTPASDLHFGDAEVER--- 290
              PR +   S +              T+T   ++    RA  PA+    G A  E    
Sbjct: 267 PNWPRMEHRRSLLTLPGGRQIATVMERTSTRGGARPMARRADAPAAT---GAARPEADDI 323

Query: 291 --CWQQANRVIDKDIRLLILGQTGVGKNEFVKALHKNSQRKNGPLVAVNCGALAKELVEA 348
                +A RV+++ + +L+ G+TG GK  F + LH  S+R  GP VAV+C +L + L+E+
Sbjct: 324 LPLLDKAVRVLNEGVSVLVNGETGSGKEVFSRRLHAASRRAAGPFVAVDCASLPETLIES 383

Query: 349 ELFGYVAGAFTGASHKGYQGKVRLADKGILFLDEIADLPLDAQSRLLHVLQDKTVLPVGS 408
           ELFGY  GAFTGA  KG  G++R A  G+LFLDEIA++PL  Q+RLL VL+++ V P+G 
Sbjct: 384 ELFGYDEGAFTGARRKGMAGRIREAHGGVLFLDEIAEIPLALQTRLLRVLEERVVTPLGG 443

Query: 409 NHATKVDIQIIAATHKNLEQLVTQGLFRQDLYYRLSDLVVELPSFQQRQDRQALIHHIHR 468
                VD  ++ ATH +L  LV  G FR DL YR++   V LP   +R DR  LI  +  
Sbjct: 444 GQGVAVDFDLVCATHGDLPALVKAGRFRADLMYRVAGFTVALPPLSRRADRHTLIARLFL 503

Query: 469 RYSDAGQ--QICGDLMQRLLAYHWPGNLRELDSLIKVASLMAEGEGVLTFNHLPTHLAQK 526
               A +  ++  D ++ L AY WPGN+REL S ++    +A+    +T   LP HL   
Sbjct: 504 ESGGAAKHLRLESDALEALAAYRWPGNVRELRSTLRAVVALADTGDSVTAAALPAHLLG- 562

Query: 527 LSHAAPT---ATE---DDQQKDIKSTVEASLLKTYQATQGNISQTSRLLGLSRNTIYRKL 580
            +HAAPT   ATE     Q   +++    ++ +  +A   ++S+ +R LG+ R+T+YR +
Sbjct: 563 -THAAPTTDAATEAALAPQAGPLQAITRHAIDEALKACDHDVSKAARRLGVHRSTVYRHI 621