Pairwise Alignments

Query, 587 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 456 a.a., Two-component system response regulator protein from Variovorax sp. SCN45

 Score =  193 bits (491), Expect = 1e-53
 Identities = 121/313 (38%), Positives = 178/313 (56%), Gaps = 23/313 (7%)

Query: 294 QANRVIDKDIRL--------LILGQTGVGKNEFVKALHKNSQRKNGPLVAVNCGALAKEL 345
           QA R + K I L        L+LG+TG GK    +ALH++S R   P VAVNC A+ KEL
Sbjct: 145 QAMREVHKRIGLAAANSMPVLVLGETGTGKEMVARALHRHSARAGRPFVAVNCSAIPKEL 204

Query: 346 VEAELFGYVAGAFTGASHKGYQGKVRLADKGILFLDEIADLPLDAQSRLLHVLQDKTVLP 405
           +E+ELFG+V GAFTGA+ +   G  R AD G+L LDEI D+ LD Q+++L  LQ+  V P
Sbjct: 205 LESELFGHVRGAFTGATGER-PGCFRAADGGVLLLDEIGDMSLDVQAKILRALQEGEVTP 263

Query: 406 VGSNHATKVDIQIIAATHKNLEQLVTQGLFRQDLYYRLSDLVVELPSFQQR-QDRQALIH 464
           +GS+   KVD++++AATH++L   V +G FR+DL YRL  L + +P  ++R  D   L  
Sbjct: 264 LGSHRTVKVDVRVVAATHRDLAAAVREGRFREDLLYRLDVLSIRMPPLRERLADIIPLAE 323

Query: 465 HIHRRYSDAG-------QQICGDLMQRLLAYHWPGNLRELDSLIKVASLMAEGEGVLTFN 517
           H  RR +  G       + +  +  QRLL++ WPGN+REL ++++    +     V+   
Sbjct: 324 HFLRRAAMQGAPDAVPNKALSAEAAQRLLSHPWPGNVRELRNVMERCHALVR-HRVIGGA 382

Query: 518 HLPTHL-AQKLSHAAPTATEDDQQKDIKSTVE----ASLLKTYQATQGNISQTSRLLGLS 572
            L   L A     A+ T   D  + ++ + VE      +      TQGN ++T+R LG+ 
Sbjct: 383 DLDLALGASPAGEASATLPADWLEGELPAAVERLERLLIAHALAQTQGNRAETARRLGIH 442

Query: 573 RNTIYRKLKALGI 585
           R  +YRKL   G+
Sbjct: 443 RQLLYRKLAQYGL 455