Pairwise Alignments

Query, 587 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 641 a.a., Transcriptional activator of acetoin dehydrogenase operon AcoR from Variovorax sp. SCN45

 Score =  280 bits (717), Expect = 1e-79
 Identities = 188/601 (31%), Positives = 302/601 (50%), Gaps = 64/601 (10%)

Query: 31  AQDIRLSDNKLKE-RRQELAGLIDTVSRFALPLFYQLFAHSDSRLILTDQHGVIIGSWGQ 89
           AQ++R    +L+   R   AG+ D          Y+  A     ++LTD  G+ +   G 
Sbjct: 55  AQEVRAHQQQLEHFLRAARAGMED---------IYRRVADLGYMVLLTDAEGITVDYIGN 105

Query: 90  ARFREKLSQIALSSGACWQEPIKGTNAIGTALIEQKPISVIGEQHFIQHHHFISCSASPI 149
             + ++L +  L  GA W E   GT  +GT L+E++P++    +HF   H  ++C+ +P+
Sbjct: 106 PAWDDQLRKAGLYLGADWNEAHAGTCGVGTCLVERQPMTCHQTEHFDATHIALTCTTAPL 165

Query: 150 FDYTGQLIGVLDITSEQQKHTLSTQVVVQNMV----QLVENQLLNQIPHGHVRIDLACEP 205
           FD++G+L  +LD+++ +      +Q +V+++V    +++E+    +   GH  + L    
Sbjct: 166 FDHSGKLTAILDVSALRSPEAKESQHLVRHLVSMYARMIEDADFLRNFRGHWILRLGSAF 225

Query: 206 SLLSSGWQGVIIADESGQILAHNQVAGQLLAQGRVIGQSVEQVLPRPQ------------ 253
            L+    + ++  D+ G +   N  A Q  A G  +  +V ++L  P             
Sbjct: 226 GLVDVAGEVMLAFDDGGTLAGANGGARQAFA-GHALSGAVSELLHMPMDAIWRIGNGGAI 284

Query: 254 ------THASFI-----YTTTPLHSKQHRTRA-------------LTPASDLHFGDAEVE 289
                  H   +     Y  + +  +  R +A             L P   +   D  ++
Sbjct: 285 SPLMPFAHTVLLPGGGEYHASLIAPRSRRAQAPATAAPSARPSDRLPPLERIAGDDPAMQ 344

Query: 290 RCWQQANRVIDKDIRLLILGQTGVGKNEFVKALHKNSQRKNGPLVAVNCGALAKELVEAE 349
           +   QA R++D+ I +L+ G+TG GK    +ALH  S R   P VAVNC A+   L+E+E
Sbjct: 345 KLLAQARRLVDRGIHVLVEGETGSGKEVLARALHSASSRAAMPFVAVNCAAIPDSLIESE 404

Query: 350 LFGYVAGAFTGASHKGYQGKVRLADKGILFLDEIADLPLDAQSRLLHVLQDKTVLPVGSN 409
           LFGY  G+FTG   KG +G +  AD+G LFLDEI D+P+  Q+RLL VL +  VLP+G+ 
Sbjct: 405 LFGYTPGSFTGGRAKGMKGLIAQADRGTLFLDEIGDMPMALQTRLLRVLSEGEVLPLGAE 464

Query: 410 HATKVDIQIIAATHKNLEQLVTQGLFRQDLYYRLSDLVVELPSFQQRQDRQALIHHIHRR 469
              +VDI ++AATH++L  LV  G FR+DLYYRL   V++LP  + R D + LI  +   
Sbjct: 465 SPQRVDIAVVAATHRHLPGLVASGRFREDLYYRLCGAVLKLPPLRARGDMRYLIEGMFNE 524

Query: 470 YSDA---GQQICGDLMQRLLAYHWPGNLRELDSLIKVASLMAEGEGVLTFNHLPTHLAQK 526
            + A     ++  + MQRLLA+ WPGNLREL + +++A  +  G  V          AQ 
Sbjct: 525 EAAAMPSPARLSEEAMQRLLAHDWPGNLRELRNALRLALALCTGASV---------SAQD 575

Query: 527 LSHAAPTATEDDQQKDIKSTVEA-SLLKTYQATQGNISQTSRLLGLSRNTIYRKLKALGI 585
           L   A   T  D + D     EA  LL   +  +  ++  +  LG+SR T YR +K LGI
Sbjct: 576 LQLQARADTVCDTEPDEDVAAEARRLLDALKRHRWRVAHAADELGMSRATAYRHMKRLGI 635

Query: 586 L 586
           +
Sbjct: 636 V 636