Pairwise Alignments

Query, 587 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 710 a.a., sigma-54-dependent Fis family transcriptional regulator from Variovorax sp. OAS795

 Score =  332 bits (851), Expect = 3e-95
 Identities = 222/677 (32%), Positives = 338/677 (49%), Gaps = 112/677 (16%)

Query: 13  LVNSW-QRSEQAGLTQQSRA--QDIRLSDNKL-KERRQELAGLIDTVSRFALPLFYQLFA 68
           L+  W QR    GL++  R   + +R SD  + +ER Q L     T +   + +  +   
Sbjct: 33  LIEQWHQRCAALGLSRVERPDFEPMRRSDLVVARERNQRLF----THAAPVMEMLLEQIV 88

Query: 69  HSDSRLILTDQHGVIIGSWGQARFREKLSQIALSSGACWQEPIKGTNAIGTALIEQKPIS 128
           ++DS ++L D  G I+ S G  RF ++ +++AL+ G  W E  KGTNAIGT L+E+ P  
Sbjct: 89  NTDSMIVLADTTGTILHSVGDDRFLQRANKVALTPGVSWAEHSKGTNAIGTTLVEETPTV 148

Query: 129 VIGEQHFIQHHHFISCSASPIFDYTGQLIGVLDITSEQQKHTLSTQVVVQNMVQLVENQL 188
           V G +HFI  ++F++CSA+PIFD  G+++GVLD+T +Q+ +   T  +V+   +++ENQ 
Sbjct: 149 VHGGEHFIHANNFLTCSAAPIFDPRGEMLGVLDVTGDQRSYHQHTMGLVRMSARMIENQW 208

Query: 189 LNQIPHGHVRIDLACEPSLLSSGWQGVIIADESGQILAHNQ------------------- 229
           L+      +R+        + +  +G+I+    G+IL  N+                   
Sbjct: 209 LSDDYGNRLRLHFHGRAEFIGTLLEGIIVVGADGKILGANRSALDQLDMSIAAVRMQSLA 268

Query: 230 --------------------------VAGQLL---------AQGRVIGQSVEQVLPR--- 251
                                     V+GQL           +  V+   V  V PR   
Sbjct: 269 SLFGITASAVFDHFRSPLPAPMMLHAVSGQLFHVSARFNGPQRSVVLDMPVSSVEPRMPE 328

Query: 252 -PQTHASFIYTTTPLHSKQHRTRALTPASDLHF---GDAEVERCWQQANRVIDKDIRLLI 307
            P    S         ++Q       P S LH+   GDA++     +  RVI++DI LL+
Sbjct: 329 EPNARPSSAARGDEAAARQAGPSPHAPLSGLHYLDTGDAQIAATLLKVRRVINRDIPLLV 388

Query: 308 LGQTGVGKNEFVKALHKNSQRKNGPLVAVNCGALAKELVEAELFGYVAGAFTGASHKGYQ 367
           LG+TG GK    +A+H++S R   P VAVNC ++ + L+EAELFGY  GAFTGA  KG  
Sbjct: 389 LGETGTGKELLARAVHQDSNRARQPFVAVNCASIPESLIEAELFGYEEGAFTGARRKGAV 448

Query: 368 GKVRLADKGILFLDEIADLPLDAQSRLLHVLQDKTVLPVGSNHATKVDIQIIAATHKNLE 427
           G++  A  G LFLDEI D+PL  Q+RLL VLQ++ V P+GS  +  VDI +I ATH+NL 
Sbjct: 449 GRIVQAHGGTLFLDEIGDMPLSLQARLLRVLQERNVTPLGSLKSIPVDIAVIGATHRNLR 508

Query: 428 QLVTQGLFRQDLYYRLSDLVVELPSFQQRQDRQALIHHI-HRRYSDAGQQICGDLMQRLL 486
           +++  G FR+DLYYRL+ LVV+LP  ++R D   +   I          +I   ++    
Sbjct: 509 EMIAAGTFREDLYYRLNGLVVKLPPLRERSDLDVVARRILLAECPQDTPEIAPAVLALFK 568

Query: 487 AYHWPGNLRELDSLIKVASLMAEGEGVLTFNHLPTHLAQK----LSHAAPTAT------- 535
           AY WPGNLR+L ++++ A++M+ GE  +  +HL     +     LS AAP A        
Sbjct: 569 AYAWPGNLRQLANVLRTAAVMSAGERHICEHHLSDDFLEDARRVLSQAAPGAAAPAPSAP 628

Query: 536 ----------------------EDDQQKDIKS--------TVEASLLKT-YQATQGNISQ 564
                                  D +   + +          E  ++++   A  GNIS 
Sbjct: 629 QAAALPQAAHAAAPPEHTMPPLRDSESLPVAAPEAPRTLGEAEIDMIRSALAAADGNISV 688

Query: 565 TSRLLGLSRNTIYRKLK 581
            S+ LG+SRNTIYRKL+
Sbjct: 689 ASKRLGISRNTIYRKLR 705