Pairwise Alignments

Query, 587 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 636 a.a., Sigma-54 dependent transcriptional regulator from Pseudomonas putida KT2440

 Score =  287 bits (734), Expect = 1e-81
 Identities = 205/616 (33%), Positives = 316/616 (51%), Gaps = 70/616 (11%)

Query: 16  SWQRS----------EQAGLTQQSRAQDIRLSDNKLKERRQELAGLIDTVSRFALPLFYQ 65
           SW+RS          EQ GL  + +  D+RL    L ER + L   ID V+    P    
Sbjct: 41  SWRRSLGHGLDCLQGEQVGLGLE-QGHDLRL----LLERNRLL---IDAVT----PELDY 88

Query: 66  LFAHSDSR--LILTDQHGVIIGSWGQARFREKLSQIALSSGACWQEPIKGTNAIGTALIE 123
           L A       +IL D    ++   GQ    ++     L  G+CW E ++GTNAIGTA++E
Sbjct: 89  LVARQGKAGIVILGDAQANVLAIEGQKHVLQREGLRDLHPGSCWSESLRGTNAIGTAVVE 148

Query: 124 QKPISVIGEQHFIQHHHFISCSASPIFDYTGQLIGVLDITSE----QQKHTLSTQVVVQN 179
            +P  +   +H++      SC++ P+ D  G++IGVLDIT E    Q + +LST ++   
Sbjct: 149 GRPTLINCGEHYLDRLSPFSCTSVPLRDPRGEVIGVLDITREGVMAQPQDSLSTLMLAAG 208

Query: 180 MVQLVENQLLNQIPHGHVRIDLACEPSLLSSGWQGVIIADESGQILAHNQVAGQLLAQGR 239
            +   E++L        + +     P  L+S W G++     G++LA N  A QLL   R
Sbjct: 209 NI---ESRLFGLCHPDQLVLAFHSRPQYLNSAWHGLLALSLDGEVLAANDGACQLLQVPR 265

Query: 240 ----------VIGQSVEQVLPR--------PQTHASFIYTTTPLHSKQHRTRALTPASD- 280
                     ++G+     + R         QT     Y       +  R    TP+S  
Sbjct: 266 HELIGRRSTDLLGERSPAFIARLWQGGVSSVQTAKGEFYFRALQLPRHGRVTPSTPSSKP 325

Query: 281 -----------LHFGDAEVERCWQQANRVIDKDIRLLILGQTGVGKNEFVKALHKNSQRK 329
                      L  GD  + R  + A + +   + +L+LG+TG GK    +ALH+ S R 
Sbjct: 326 ALSKQSPALDALAGGDQRLARNLRMARQGLGNGLPVLLLGETGTGKEVVARALHQASPRA 385

Query: 330 NGPLVAVNCGALAKELVEAELFGYVAGAFTGASHKGYQGKVRLADKGILFLDEIADLPLD 389
           + P VAVNC A+ + L+E+ELFGY  GAFTG+   G  G++  A  G LFLDEI D+PL 
Sbjct: 386 DKPFVAVNCAAIPEGLIESELFGYREGAFTGSRRGGMVGRLMQAHGGTLFLDEIGDMPLA 445

Query: 390 AQSRLLHVLQDKTVLPVGSNHATKVDIQIIAATHKNLEQLVTQGLFRQDLYYRLSDLVVE 449
            Q+RLL VLQ++ V P+G+     +D+ +I ATH++L++LV +  FR+DL+YR++ + + 
Sbjct: 446 LQARLLRVLQERRVAPLGAGDEQDIDVALICATHRDLKRLVQEQHFREDLFYRVNGVSLR 505

Query: 450 LPSFQQRQDRQALIHHIHRRYSDAGQQICGDLMQRLLAYHWPGNLRELDSLIKVASLMAE 509
           LP+ ++R D  A+I  +  +    G  +   L   L  + WPGN+R+L+ +++ A  M E
Sbjct: 506 LPALRERDDLAAIIQGLLDKADARGVTLDPALTALLEGFDWPGNIRQLEMVVRTALAMRE 565

Query: 510 -GEGVLTFNHLPTHLAQKL-SHAAPTATEDDQQKDIKSTVEASLLKTYQATQGNISQTSR 567
            GE VLT +HL   L  +L S AAP+ +  D + +    +  +L +     QGN+S  + 
Sbjct: 566 DGEQVLTLDHLTDCLLDELASSAAPSGSLKDSELE---QIRGALAR----HQGNVSAAAA 618

Query: 568 LLGLSRNTIYRKLKAL 583
            LG+SR T+YRKLK L
Sbjct: 619 ALGISRATLYRKLKQL 634