Pairwise Alignments

Query, 587 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 671 a.a., sigma-54 dependent transcriptional regulator from Pseudomonas putida KT2440

 Score =  276 bits (705), Expect = 3e-78
 Identities = 200/646 (30%), Positives = 329/646 (50%), Gaps = 77/646 (11%)

Query: 13  LVNSWQRS-EQAGLTQQSRAQDIRLSDNKLKERRQELAGLIDTVSRFALPLFYQLFAHSD 71
           +  SW R  E   L        + L   +L E R+ L  ++  ++   +   +Q  + + 
Sbjct: 30  IARSWLRCLEDYHLDPAVIEAPVVLEHGRLLESRERLHQVLQ-IADHEMNSLHQQLSGAG 88

Query: 72  SRLILTDQHGVIIGSWGQARFREKLSQIALSSGACWQEPIKGTNAIGTALIEQKPISVIG 131
             ++LTD  GVI+        R    +  L  GA W E  +GTN IGT L+E++ +++  
Sbjct: 89  HAVLLTDARGVILNCVSAPAERRSFERAGLWLGADWSEAREGTNGIGTCLVERQALTIHQ 148

Query: 132 EQHFIQHHHFISCSASPIFDYTGQLIGVLDITSEQQKHTLSTQVVVQNMVQLVENQLLNQ 191
            +HF   H  ++CSASP+FD  G L+ VLD++S +   +  +Q     +V L    + + 
Sbjct: 149 NEHFRGRHTGLTCSASPVFDPHGDLLAVLDVSSARPDVSRQSQFHTMALVNLSAKMIESC 208

Query: 192 IPHGH------VRIDLACEPSLLSSGWQGVIIADESGQILAHNQVAGQLLA--QGRVIGQ 243
               H      +R  L  E   L S  +G++  D  G+I A NQ A  LL   +G V+G+
Sbjct: 209 YFLRHFEQQWLLRFHLQAESVGLFS--EGLLAFDGDGRICAANQSALNLLGTVRGGVLGK 266

Query: 244 SVE--------QVLPRPQTHASFIYTTTPLHSKQH----RTRALTP------ASDLHFGD 285
            +E        ++  R     S ++    L  +Q     R +A  P      A     G+
Sbjct: 267 PLECFFACSHDEMFSRATPGGSAVWPLRTLDGRQVFASLRGQARAPVWSVPAAQPRPAGE 326

Query: 286 AEVERC---------WQQANRVIDKDIRLLILGQTGVGKNEFVKALHKNSQRKNGPLVAV 336
            E   C         ++++ RV ++D+ LL+ G+TG GK  F +A+H+ S+R+  P VA+
Sbjct: 327 VEPLVCLLDPALQNDFRRSVRVFERDVPLLLRGETGCGKEAFAQAVHQASERRGKPFVAI 386

Query: 337 NCGALAKELVEAELFGYVAGAFTGASHKGYQGKVRLADKGILFLDEIADLPLDAQSRLLH 396
           NC ++ + L+E+ELFGY  G+FTGA  +G +GK+  AD G L LDEI D+PL  Q+RLL 
Sbjct: 387 NCASIPESLIESELFGYRGGSFTGARKEGMRGKLLQADGGTLLLDEIGDMPLALQTRLLR 446

Query: 397 VLQDKTVLPVGSNHATKVDIQIIAATHKNLEQLVTQGLFRQDLYYRLSDLVVELPSFQQR 456
           VL+++ V+P+G      VD++I++ATH++L + V QG FR+DLYYRL+ L V LP+ ++R
Sbjct: 447 VLEERQVVPIG-GEPQAVDVRIVSATHRDLLERVEQGSFREDLYYRLNGLEVALPAVRER 505

Query: 457 QDRQALIHHIHRRYSDAGQQICGD--LMQRLLAYHWPGNLRELDSLIKVASLMAEGEGVL 514
            D+  L+  + R+ +  GQ I  +    Q LLA++WPGN+R++ ++++    + E +  +
Sbjct: 506 SDKAQLLDFLLRQETQ-GQWIDIEPRARQALLAFNWPGNVRQMRNVLRTLVALCE-DARI 563

Query: 515 TFNHLPTHL-----------------------------AQKLSHAAPTATEDDQQK---D 542
           TF  LP  +                              Q  SH +  A E + +    +
Sbjct: 564 TFADLPAVIRTSPPLAGVGEPAKMSDQEMEGEGVALVRGQARSHRSGGAAEIEGESAGTE 623

Query: 543 IKSTVEASLLK-TYQATQGNISQTSRLLGLSRNTIYRKLKALGILK 587
           +    E   LK   +A   ++++ +  LG+SRNT+YRKL+  GI +
Sbjct: 624 VLLDAERQALKEVLEAKHWHLTRVAEHLGISRNTLYRKLRKHGITR 669