Pairwise Alignments

Query, 587 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 629 a.a., Acetoin catabolism regulatory protein from Pseudomonas sp. DMC3

 Score =  293 bits (750), Expect = 1e-83
 Identities = 196/607 (32%), Positives = 318/607 (52%), Gaps = 43/607 (7%)

Query: 13  LVNSWQRS-EQAGLTQQSRAQDIRLSDNKLKERRQELAGLIDTVSRFALPLFYQLFAHSD 71
           +  SW+R  +Q  L   SR     L   +L+E R  L  +I +V+ + +   +Q      
Sbjct: 32  ITRSWRRCLDQYQLDPASRRAPDVLEQARLREHRAPLEHII-SVAHWQMNSLHQQLGRDG 90

Query: 72  SRLILTDQHGVIIGSWGQARFREKLSQIALSSGACWQEPIKGTNAIGTALIEQKPISVIG 131
             ++LTD  GV I S      R +  +  L  G+ W E  +GTN +GT L+E++ +++  
Sbjct: 91  HVVLLTDARGVAIDSVFNEAERGEFQRSGLWLGSVWSEEHEGTNGVGTCLVERQHVTIRR 150

Query: 132 EQHFIQHHHFISCSASPIFDYTGQLIGVLDITSEQQKHTLSTQVVVQNMVQLVENQLLNQ 191
           ++HF   H  ++CSASPIFD +G+L+ VL+++S ++  +L  +     +  L    + + 
Sbjct: 151 DEHFRGQHVGLTCSASPIFDASGELLAVLNLSSVREDSSLEQRFKAMALTNLSARLIESC 210

Query: 192 IPHGH--VRIDLACEPSLLSSGW--QGVIIADESGQILAHNQVAGQLLAQGR--VIGQSV 245
              GH   R  L   P     G   +G++  DES +I + N  A  LL   R  ++GQS+
Sbjct: 211 FFLGHDPQRYLLRFHPDAGFVGLLGEGLLSFDESARICSVNAAALDLLGLSREQMVGQSL 270

Query: 246 EQVLPRP----------QTHASFIYTTT-----------PLHSKQHRTRALTPASD--LH 282
             +L  P          Q H  +                P+ S       + P  D  + 
Sbjct: 271 TMLLETPMEQLLDQASAQAHVCWPMRLADGRLFYGQLREPIRSAPLTLAPVPPIKDERVC 330

Query: 283 FGDAEVERCWQQANRVIDKDIRLLILGQTGVGKNEFVKALHKNSQRKNGPLVAVNCGALA 342
             D+ ++R + +A RV+++D+ + + G+TG GK  F  ALH+ S R   P VA+NC A+ 
Sbjct: 331 LEDSRLQRGFARALRVLERDVPVFLQGETGTGKEAFAAALHRASSRAGQPFVAINCAAIP 390

Query: 343 KELVEAELFGYVAGAFTGASHKGYQGKVRLADKGILFLDEIADLPLDAQSRLLHVLQDKT 402
           + L+E+ELFGY  G+FTGA   G  GK+  A  GILFLDEI D+PL  Q+RLL VL+++ 
Sbjct: 391 ETLIESELFGYRGGSFTGARKDGMVGKLEQAHGGILFLDEIGDMPLALQTRLLRVLEERQ 450

Query: 403 VLPVGSNHATKVDIQIIAATHKNLEQLVTQGLFRQDLYYRLSDLVVELPSFQQRQDRQAL 462
           V+P+GS     +D+++I+A+H+NL   V  G  R+DL+YR+    VELP  ++R D+  L
Sbjct: 451 VVPLGSATPRPLDVRLISASHQNLPACVADGRLREDLFYRIGGFAVELPPLRERSDKGRL 510

Query: 463 IHHIHR-RYSDAGQQICGDLMQRLLAYHWPGNLRELDSLIKVASLMAEGEGVLTFNHLPT 521
           +  + R   + A  ++   + +RLLA  WPGN+R+L + ++    +A  EG +T   +  
Sbjct: 511 LDLLLREEAAGATVRLQAGVRERLLAQPWPGNVRQLRTCLRTLVALAV-EGRVTLEDV-- 567

Query: 522 HLAQKLSHAAPTATEDDQQKDIKSTVE-ASLLKTYQATQGNISQTSRLLGLSRNTIYRKL 580
                  H    A++D    D     E  +LL   +A   ++++ +R LG+SRNT+YRKL
Sbjct: 568 -------HELLPASDDQPVDDPLGVSERQTLLSMIEAEHWHVARVARRLGISRNTLYRKL 620

Query: 581 KALGILK 587
           +  GI +
Sbjct: 621 RQHGITR 627