Pairwise Alignments

Query, 587 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 503 a.a., sigma-54 interaction domain-containing protein from Pseudomonas segetis P6

 Score =  189 bits (479), Expect = 3e-52
 Identities = 115/331 (34%), Positives = 181/331 (54%), Gaps = 17/331 (5%)

Query: 264 PLHSKQHRTRALTPASDLHFG----DAEVERCWQQANRVIDKDIRLLILGQTGVGKNEFV 319
           P  ++  +  +L PA    +G       +   +Q   +V+   + +L+ G+TG GK    
Sbjct: 176 PSQTETQQPESLQPACASGYGLIGNSQAMRDVYQLIGKVLHNPVSVLLTGETGTGKELVA 235

Query: 320 KALHKNSQRKNGPLVAVNCGALAKELVEAELFGYVAGAFTGASHKGYQGKVRLADKGILF 379
           +A+H    R++   V  NC +L + L+E+ELFGY  GAFTGA  + ++G    AD G LF
Sbjct: 236 QAIHNCGSRRSKNFVVQNCASLPEHLLESELFGYRKGAFTGAD-RDHKGLFDAADGGTLF 294

Query: 380 LDEIADLPLDAQSRLLHVLQDKTVLPVGSNHATKVDIQIIAATHKNLEQLVTQGLFRQDL 439
           LDEI D+PL  Q++LL VLQ+  V P+G N   KVD++IIAATH +L   V +GLFR+DL
Sbjct: 295 LDEIGDMPLSLQAKLLRVLQEGEVRPLGCNDTHKVDVRIIAATHFDLHDQVEKGLFREDL 354

Query: 440 YYRLSDLVVELPSFQQRQDRQALI--HHIHRRYSDAGQQICG---DLMQRLLAYHWPGNL 494
           +YRLS   +ELP  ++R D  AL+  H +        ++ C    + +  +  Y +PGN+
Sbjct: 355 FYRLSHFPIELPPLRERNDDIALLARHFVDNTCEFLKREPCACSDETLASISQYSFPGNV 414

Query: 495 RELDSLIKVASLMAEGEGVLTFNHLPTHLAQKLSHAAPTATEDDQQKDIKSTVEASLLKT 554
           R+L  L++ A L+ EG  +     LP H    L+    T      ++ ++      LL +
Sbjct: 415 RQLKGLVERAVLLCEGNEL-----LPEHF--NLNRETGTDAATSLRQRMEQVERNFLLDS 467

Query: 555 YQATQGNISQTSRLLGLSRNTIYRKLKALGI 585
            +  +GN S+ +R LGL R T+  +++ L I
Sbjct: 468 LRKNRGNQSKAARELGLPRRTLLYRMERLNI 498