Pairwise Alignments

Query, 587 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 685 a.a., Nitrogen regulation protein NR(I) from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  235 bits (599), Expect = 5e-66
 Identities = 133/332 (40%), Positives = 194/332 (58%), Gaps = 36/332 (10%)

Query: 281 LHFGDAEVERCWQQANRVIDKDIRLLILGQTGVGKNEFVKALHKNSQRKNGPLVAVNCGA 340
           L  GD +V     +  RV  +DI ++ILG+TG GK+   +A+H +S R   P V+VNC +
Sbjct: 347 LDTGDPQVSAVIHKLRRVSGRDIPVMILGETGTGKDLLAQAIHGDSTRSAHPFVSVNCAS 406

Query: 341 LAKELVEAELFGYVAGAFTGASHKGYQGKVRLADKGILFLDEIADLPLDAQSRLLHVLQD 400
           +   L+E+ELFGY  GAFTGA  KG  GK+  A  G LFLDEI D+P   Q+RLL VLQD
Sbjct: 407 IPDTLIESELFGYEEGAFTGARKKGSIGKILQAHGGTLFLDEIGDMPKHLQARLLRVLQD 466

Query: 401 KTVLPVGSNHATKVDIQIIAATHKNLEQLVTQGLFRQDLYYRLSDLVVELPSFQQRQDRQ 460
           + V P+G+    +VD+ +I+ATHKNL+ ++ +G FR+DLYYRL+ LVV LP+ ++R D +
Sbjct: 467 RKVSPLGAGKEVEVDVTVISATHKNLKDMIARGDFREDLYYRLNGLVVRLPALRERTDFE 526

Query: 461 ALIHHIHRRYSDAGQQI--CGDLMQRLLAYHWPGNLRELDSLIKVASLMAEGEGVLTFNH 518
            ++H I +   +  QQI    ++M     Y WPGN R+L +L++ A +M   +GV+   H
Sbjct: 527 LVVHKILKALCEQDQQIGIAPNVMALFKRYQWPGNFRQLHNLLRTAVVMVGSDGVIDVAH 586

Query: 519 LPTHLAQKLSHA-APTATE-----------------------------DDQQ-KDIKSTV 547
           LP     +L HA A  ATE                             D Q+ +D+  + 
Sbjct: 587 LPDDFLDELEHAQAGDATEAALPEAFGTGTAGSAPLLPPSPLTEVTPGDGQRLQDVTLSA 646

Query: 548 EASLLKTYQATQGNISQTSRLLGLSRNTIYRK 579
            A +L+ ++   GN+S  ++ LG+SRNTIYRK
Sbjct: 647 MAQMLRLHK---GNVSAAAKALGVSRNTIYRK 675



 Score =  120 bits (300), Expect = 2e-31
 Identities = 61/168 (36%), Positives = 97/168 (57%)

Query: 64  YQLFAHSDSRLILTDQHGVIIGSWGQARFREKLSQIALSSGACWQEPIKGTNAIGTALIE 123
           Y    ++ S ++LT   G+++ S G   F EK SQ+AL+ G  W E  KGTNAIGTAL E
Sbjct: 80  YDQIVNTHSMVLLTSAKGLVLHSLGDTDFLEKASQVALTPGMDWSEKNKGTNAIGTALSE 139

Query: 124 QKPISVIGEQHFIQHHHFISCSASPIFDYTGQLIGVLDITSEQQKHTLSTQVVVQNMVQL 183
           ++ ++V G QH++  + F++CS SPIFD  GQ+IG LD+T + + +   T  +V+   Q+
Sbjct: 140 EEALTVHGSQHYMDANKFLTCSCSPIFDPYGQVIGALDVTGDHRSYHQHTLALVRMSAQM 199

Query: 184 VENQLLNQIPHGHVRIDLACEPSLLSSGWQGVIIADESGQILAHNQVA 231
           +EN +   I    +RI        L +  +G+ +    G+ L+ N+ A
Sbjct: 200 IENHMFADIFPKAIRIHFHTRSEFLGTLVEGIAVFSPEGRFLSANRSA 247