Pairwise Alignments

Query, 587 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 671 a.a., Acetoin catabolism regulatory protein from Methylophilus sp. DMC18

 Score =  340 bits (872), Expect = 1e-97
 Identities = 213/616 (34%), Positives = 337/616 (54%), Gaps = 50/616 (8%)

Query: 13  LVNSWQRSEQAGLTQQSRAQDIRLSDNKLKERRQELAGLIDTVSRFALPLFYQLFAHSDS 72
           +  SW+R    G+ +Q+ A+D  ++  +L +R ++   L+       + L  Q+ AH+ S
Sbjct: 62  IARSWRRCMVKGVDEQAPAEDQIITAQELAQRLEKNRLLLAQAEPEMITLSEQI-AHTRS 120

Query: 73  RLILTDQHGVIIGSWGQARFREKLSQIALSSGACWQEPIKGTNAIGTALIEQKPISVIGE 132
            +ILTD  GVI+ + G+    E   + +L  GA W E  +GTNAIGTAL+E+  ISV G 
Sbjct: 121 LVILTDHEGVILRTMGEG-VDENQIRASLLPGASWSEEHRGTNAIGTALVERLAISVQGA 179

Query: 133 QHFIQHHHFISCSASPIFDYTGQLIGVLDITSE---QQKHTLSTQVVVQNMVQLVENQLL 189
           +HF+ +HH +SCSA PIF     L+  LD++++    Q+HTL+   +V+   Q+VEN+L 
Sbjct: 180 EHFMAYHHSLSCSAVPIFAANNHLVATLDVSNDLNAPQQHTLA---LVKMAAQMVENRLF 236

Query: 190 NQIPHGHVRIDLACEPSLLSSGWQGVIIADESGQILAHNQVAGQL----------LAQGR 239
           +    G + +     P  + + W+GV + D +GQ+   N+ +GQ           L+  R
Sbjct: 237 HATAEGEIAVHFHVRPEFIGTLWEGVALFDAAGQLQTINR-SGQFQFGLPLDQDSLSARR 295

Query: 240 VI---------------GQSVEQVLPRPQTHASFIYTTTPLHSKQHRTRALTPASD---- 280
           +                G + + + P    + + +Y            + + P +     
Sbjct: 296 IAFEDIFDESWIAFKQRGLNTDVLFPLHLRNGARLYARASASQAPSAPKKMPPLAPRESA 355

Query: 281 -----LHFGDAEVERCWQQANRVIDKDIRLLILGQTGVGKNEFVKALHKNSQRKNGPLVA 335
                L  GD + +    Q  +V+DKDI +LILG+TG GK  F +A+H  S R++ P +A
Sbjct: 356 ASLELLDSGDPQFKLAITQVKQVLDKDIPVLILGETGAGKELFSRAIHDASARRHKPFIA 415

Query: 336 VNCGALAKELVEAELFGYVAGAFTGASHKGYQGKVRLADKGILFLDEIADLPLDAQSRLL 395
           VNC AL + L+EAELFGY  GA+TGA  KG  GK++ AD G LFLDEI D+PL  Q+RLL
Sbjct: 416 VNCAALPEGLIEAELFGYEEGAYTGAKRKGNLGKIQQADGGTLFLDEIGDMPLSLQARLL 475

Query: 396 HVLQDKTVLPVGSNHATKVDIQIIAATHKNLEQLVTQGLFRQDLYYRLSDLVVELPSFQQ 455
            VLQ+++V P+G + +  V+  +++AT++ L+  V  G FR DLYYR++ L V+LP+ ++
Sbjct: 476 RVLQERSVTPLGGSKSIPVNFMLLSATNQKLKDKVAAGEFRSDLYYRINGLSVQLPALRE 535

Query: 456 RQDRQALIHHIHRRYSDAGQQICGDLMQRLLAYHWPGNLRELDSLIKVASLMAEGEGVLT 515
           R D   LI  I +        +  ++M    A+ WPGN+R+L ++++ A  +A+G GV+ 
Sbjct: 536 RLDMARLIQVILQIEQAPQASLSEEVMALFNAHPWPGNVRQLHNVLRTAVALADG-GVIG 594

Query: 516 FNHLP----THLAQKLSHAAPTAT--EDDQQKDIKSTVEASLLKTYQATQGNISQTSRLL 569
             HL       +  K + A P+A          +K   + ++ +      GNIS  SR L
Sbjct: 595 RQHLMQDFLDEMLAKKADAEPSAVGMAALPAASLKVQNDEAIRQAMLQHGGNISAVSRQL 654

Query: 570 GLSRNTIYRKLKALGI 585
           GLSRNT+YR+LKAL +
Sbjct: 655 GLSRNTLYRRLKALNL 670