Pairwise Alignments

Query, 587 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 441 a.a., Response regulator of zinc sigma-54-dependent two-component system from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  190 bits (483), Expect = 9e-53
 Identities = 115/289 (39%), Positives = 171/289 (59%), Gaps = 13/289 (4%)

Query: 298 VIDKDIRLLILGQTGVGKNEFVKALHKNSQRKNGPLVAVNCGALAKELVEAELFGYVAGA 357
           V   D  +LI G +G GK    +ALH  S R + PLV +NC AL + L+E+ELFG+  GA
Sbjct: 158 VAPSDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNESLLESELFGHEKGA 217

Query: 358 FTGASHKGYQGKVRLADKGILFLDEIADLPLDAQSRLLHVLQDKTVLPVGSNHATKVDIQ 417
           FTGA  K  +G+   AD G LFLDEI D+    Q RLL  +Q++ V  VGSN    VD++
Sbjct: 218 FTGAD-KRREGRFVEADGGTLFLDEIGDISPLMQVRLLRAIQEREVQRVGSNQTISVDVR 276

Query: 418 IIAATHKNLEQLVTQGLFRQDLYYRLSDLVVELPSF-QQRQDRQALIHHIHRRYSDAGQQ 476
           +IAATH++L + V+ G FRQDLYYRL+ + +E+PS  Q+R+D   L  H  RR+++  ++
Sbjct: 277 LIAATHRDLAEEVSAGRFRQDLYYRLNVVAIEMPSLRQRREDIPLLADHFLRRFAERNRK 336

Query: 477 I----CGDLMQRLLAYHWPGNLRELDSLIKVASLMAEGEGVLTFNHLPTHLAQKLSHAAP 532
           +        M  L+ Y WPGN+REL++ I+ A ++  GE  ++   LP  +A     A P
Sbjct: 337 VVKGFTPQAMDLLIHYDWPGNIRELENAIERAVVLLTGE-YISERELPLAIA-----ATP 390

Query: 533 TATE-DDQQKDIKSTVEASLLKTYQATQGNISQTSRLLGLSRNTIYRKL 580
             TE   + + +    +  +L   + T GN ++ +R LG++R T+  KL
Sbjct: 391 IKTEYSGEIQPLVDVEKEVILAALEKTGGNKTEAARQLGITRKTLLAKL 439