Pairwise Alignments

Query, 587 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 461 a.a., fused response regulator of ato operon, in two-component system with AtoS: response regulator/sigma54 interaction protein (NCBI) from Escherichia coli BW25113

 Score =  191 bits (486), Expect = 4e-53
 Identities = 108/290 (37%), Positives = 179/290 (61%), Gaps = 11/290 (3%)

Query: 305 LLILGQTGVGKNEFVKALHKNSQRKNGPLVAVNCGALAKELVEAELFGYVAGAFTGASHK 364
           +LI G++G GK    +A+H NS+R  GP + VNC AL + L+E+ELFG+  GAFTGA   
Sbjct: 169 VLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPESLLESELFGHEKGAFTGAQTL 228

Query: 365 GYQGKVRLADKGILFLDEIADLPLDAQSRLLHVLQDKTVLPVGSNHATKVDIQIIAATHK 424
             QG    A++G L LDEI ++PL  Q++LL +LQ++    +G +   KVDI+IIAAT++
Sbjct: 229 R-QGLFERANEGTLLLDEIGEMPLVLQAKLLRILQEREFERIGGHQTIKVDIRIIAATNR 287

Query: 425 NLEQLVTQGLFRQDLYYRLSDLVVELPSFQ-QRQDRQALIHHIHRRYSDAGQQICGDL-- 481
           +L+ +V +G FR+DL+YRL+ + + LP  + +R+D   L +H  +++S   Q+   D+  
Sbjct: 288 DLQAMVKEGTFREDLFYRLNVIHLILPPLRDRREDISLLANHFLQKFSSENQRDIIDIDP 347

Query: 482 --MQRLLAYHWPGNLRELDSLIKVASLMAEGEGVLTFNHLPTHLAQKLSHAAPTAT---- 535
             M  L A+ WPGN+REL ++I+ A +M  G  ++    LP  + Q + +A    T    
Sbjct: 348 MAMSLLTAWSWPGNIRELSNVIERAVVMNSGP-IIFSEDLPPQIRQPVCNAGEVKTAPVG 406

Query: 536 EDDQQKDIKSTVEASLLKTYQATQGNISQTSRLLGLSRNTIYRKLKALGI 585
           E + +++IK   +  +++  +  +GN ++T+ +LG+SR  +  KL+  GI
Sbjct: 407 ERNLKEEIKRVEKRIIMEVLEQQEGNRTRTALMLGISRRALMYKLQEYGI 456