Pairwise Alignments

Query, 587 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 470 a.a., nitrogen regulation protein NR(I) from Enterobacter asburiae PDN3

 Score =  191 bits (486), Expect = 4e-53
 Identities = 126/335 (37%), Positives = 184/335 (54%), Gaps = 27/335 (8%)

Query: 277 PASDLHFGDAEVERCWQQANRVIDKDIRLLILGQTGVGKNEFVKALHKNSQRKNGPLVAV 336
           P +D+      ++  ++   R+    I +LI G++G GK     ALH++S R   P +A+
Sbjct: 136 PTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHRHSPRAKAPFIAL 195

Query: 337 NCGALAKELVEAELFGYVAGAFTGASHKGYQGKVRLADKGILFLDEIADLPLDAQSRLLH 396
           N  A+ K+L+E+ELFG+  GAFTGA+    QG+   AD G LFLDEI D+PLD Q+RLL 
Sbjct: 196 NMAAIPKDLIESELFGHEKGAFTGANTIR-QGRFEQADGGTLFLDEIGDMPLDVQTRLLR 254

Query: 397 VLQDKTVLPVGSNHATKVDIQIIAATHKNLEQLVTQGLFRQDLYYRLSDLVVELPSF-QQ 455
           VL D     VG     KVD++IIAATH+NLEQ V +G FR+DL++RL+ + V LP   ++
Sbjct: 255 VLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRLNVIRVHLPPLRER 314

Query: 456 RQDRQALIHHI----HRRYSDAGQQICGDLMQRLLAYHWPGNLRELDSLIKVASLMAEGE 511
           R+D   L  H      R      +Q+  +    L    WPGN+R+L++  +  ++MA G+
Sbjct: 315 REDIPRLARHFLQVAARELGVEAKQLHPETDAALTRLAWPGNVRQLENTCRWLTVMAAGQ 374

Query: 512 GVL-----------------TFNHLPTHLAQKLSHAAPTATEDDQQ---KDIKSTVEASL 551
            VL                 T + LP   A  L+  A  A     Q    + +  +E +L
Sbjct: 375 EVLIQDLPAELFEATAPESSTGHALPDSWATLLAQWADRALRSGHQNLLSEAQPEMERTL 434

Query: 552 LKT-YQATQGNISQTSRLLGLSRNTIYRKLKALGI 585
           L T  + TQG+  + +RLLG  RNT+ RKLK LG+
Sbjct: 435 LTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 469